Bacterial community structure in response to environmental impacts in the intertidal sediments along the Yangtze Estuary, China

被引:60
作者
Guo, Xing-pan [1 ]
Lu, Da-pei [1 ]
Niu, Zuo-shun [1 ]
Feng, Jing-nan [1 ]
Chen, Yu-ru [1 ]
Tou, Fei-yun [1 ]
Liu, Min [1 ]
Yang, Yi [1 ,2 ]
机构
[1] East China Normal Univ, Sch Geog Sci, Minist Educ, Key Lab Geog Informat Sci, 500 Dongchuan Rd, Shanghai 200241, Peoples R China
[2] East China Normal Univ, State Key Lab Estuarine & Coastal Res, 3663 North Zhongshan Rd, Shanghai 200062, Peoples R China
基金
中国国家自然科学基金;
关键词
Bacterial community; Intertidal sediment; Yangtze Estuary; MiSeq sequencing; Sulphate reduction; ANAEROBIC AMMONIUM OXIDATION; SURFACE SEDIMENTS; ORGANIC-MATTER; CHANGJIANG ESTUARY; MARSH SEDIMENTS; SULFATE; DIVERSITY; SEA; CARBON; WATER;
D O I
10.1016/j.marpolbul.2017.11.003
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
This study was designed to investigate the characteristics of bacterial communities in intertidal sediments along the Yangtze Estuary and their responses to environmental factors. The results showed that bacterial abundance was significantly correlated with salinity, SO42- and total organic carbon, while bacterial diversity was significantly correlated with SO42- and total nitrogen. At different taxonomic levels, both the dominant taxa and their abundances varied among the eight samples, with Proteobacteria being the most dominant phylum in general. Cluster analysis revealed that the bacterial community structure was influenced by river runoff and sewerage discharge. Moreover, SO42-, salinity and total phosphorus were the vital environmental factors that influenced the bacterial community structure. Quantitative PCR and sequencing of sulphate-reducing bacteria indicated that the sulphate reduction process occurs frequently in intertidal sediments. These findings are important to understand the microbial ecology and biogeochemical cycles in estuarine environments.
引用
收藏
页码:141 / 149
页数:9
相关论文
共 62 条
[1]  
Barlett MA, 2010, CAN J MICROBIOL, V56, P32, DOI [10.1139/W09-099, 10.1139/w09-099]
[2]   Dominance of bacterial metabolism in oligotrophic relative to eutrophic waters [J].
Biddanda, B ;
Ogdahl, M ;
Cotner, J .
LIMNOLOGY AND OCEANOGRAPHY, 2001, 46 (03) :730-739
[3]   Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries [J].
Bouvier, TC ;
del Giorgio, PA .
LIMNOLOGY AND OCEANOGRAPHY, 2002, 47 (02) :453-470
[4]   QIIME allows analysis of high-throughput community sequencing data [J].
Caporaso, J. Gregory ;
Kuczynski, Justin ;
Stombaugh, Jesse ;
Bittinger, Kyle ;
Bushman, Frederic D. ;
Costello, Elizabeth K. ;
Fierer, Noah ;
Pena, Antonio Gonzalez ;
Goodrich, Julia K. ;
Gordon, Jeffrey I. ;
Huttley, Gavin A. ;
Kelley, Scott T. ;
Knights, Dan ;
Koenig, Jeremy E. ;
Ley, Ruth E. ;
Lozupone, Catherine A. ;
McDonald, Daniel ;
Muegge, Brian D. ;
Pirrung, Meg ;
Reeder, Jens ;
Sevinsky, Joel R. ;
Tumbaugh, Peter J. ;
Walters, William A. ;
Widmann, Jeremy ;
Yatsunenko, Tanya ;
Zaneveld, Jesse ;
Knight, Rob .
NATURE METHODS, 2010, 7 (05) :335-336
[5]  
CHAO A, 1993, BIOMETRIKA, V80, P193, DOI 10.1093/biomet/80.1.193
[6]   The processes of dynamic sedimentation in the Changjiang Estuary [J].
Chen, JY ;
Li, DJ ;
Chen, BL ;
Hu, FX ;
Zhu, HF ;
Liu, CZ .
JOURNAL OF SEA RESEARCH, 1999, 41 (1-2) :129-140
[7]  
Clarke K R., 1994, An approach to statistical analysis and interpretation
[8]   Bacterial diversity of metagenomic and PCR libraries from the Delaware River [J].
Cottrell, MT ;
Waidner, LA ;
Yu, LY ;
Kirchman, DL .
ENVIRONMENTAL MICROBIOLOGY, 2005, 7 (12) :1883-1895
[9]   Search and clustering orders of magnitude faster than BLAST [J].
Edgar, Robert C. .
BIOINFORMATICS, 2010, 26 (19) :2460-2461
[10]   Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea [J].
Feng, Bi-Wei ;
Li, Xiao-Ran ;
Wang, Jin-Hui ;
Hu, Zi-Ye ;
Meng, Han ;
Xiang, Ling-Yun ;
Quan, Zhe-Xue .
FEMS MICROBIOLOGY ECOLOGY, 2009, 70 (02) :236-248