Effects of Sequence and Solvation on the Temperature-Pressure Conformational Landscape of Proteinlike Heteropolymers

被引:9
作者
Matysiak, Silvina [1 ]
Das, Payel [2 ]
机构
[1] Univ Maryland, Fischell Dept Bioengn, College Pk, MD 20742 USA
[2] IBM Thomas J Watson Res Ctr, Computat Biol Ctr, Yorktown Hts, NY 10598 USA
关键词
COLD DENATURATION; HYDROPHOBIC HYDRATION; SECONDARY STRUCTURE; ENERGY LANDSCAPE; WATER-MOLECULES; MODEL; PERIODICITY; PERSPECTIVE; SIMULATION; STABILITY;
D O I
10.1103/PhysRevLett.111.058103
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We study the role of sequence and solvation in shaping the temperature-pressure (T, P) conformational landscape of model heteropolymers with a coarse-grained model. We design foldable primarily hydrophobic sequences with fixed polar content in water at physiological conditions, which demonstrate (T, P) dependence of conformational stability similar to biological proteins. Inherent helicity emerges as a result of local polar-polar interactions in the sequences that mimic biological alpha helices. The helical propensity is reduced upon solvation and remains unaltered at cold T and high P, which is driven by the T-P induced changes of the hydration shell. Consequently, at nonphysiological conditions the weakening of hydrophobic interactions facilitates population of non-native, helical, compact conformations stabilized through direct nonlocal interactions between polar residues.
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页数:5
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共 35 条
[31]   Molecular Simulation of ab Initio Protein Folding for a Millisecond Folder NTL9(1-39) [J].
Voelz, Vincent A. ;
Bowman, Gregory R. ;
Beauchamp, Kyle ;
Pande, Vijay S. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (05) :1526-+
[32]   PERIODICITY OF POLAR AND NONPOLAR AMINO-ACIDS IS THE MAJOR DETERMINANT OF SECONDARY STRUCTURE IN SELF-ASSEMBLING OLIGOMERIC PEPTIDES [J].
XIONG, HY ;
BUCKWALTER, BL ;
SHIEH, HM ;
HECHT, MH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (14) :6349-6353
[33]   Pressure effect on helix-coil transition of an alanine-based peptide: Theoretical analysis [J].
Yoshidome, Takashi ;
Kinoshita, Masahiro .
CHEMICAL PHYSICS LETTERS, 2009, 477 (1-3) :211-215
[34]   Pressure effects on structures formed by entropically driven self-assembly: Illustration for denaturation of proteins [J].
Yoshidome, Takashi ;
Harano, Yuichi ;
Kinoshita, Masahiro .
PHYSICAL REVIEW E, 2009, 79 (01)
[35]   Glassy Nature of Water in an Ultraconfining Disordered Material: The Case of Calcium-Silicate-Hydrate [J].
Youssef, Mostafa ;
Pellenq, Roland J-M ;
Yildiz, Bilge .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (08) :2499-2510