Chiral Sum Frequency Generation for In Situ Probing Proton Exchange in Antiparallel β-Sheets at Interfaces

被引:76
作者
Fu, Li [1 ]
Xiao, Dequan [1 ]
Wang, Zhuguang [1 ]
Batista, Victor S. [1 ]
Yan, Elsa C. Y. [1 ]
机构
[1] Yale Univ, Dept Chem, New Haven, CT 06520 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
ISLET AMYLOID POLYPEPTIDE; AMIDE HYDROGEN-EXCHANGE; VIBRATIONAL SPECTROSCOPY; INFRARED-SPECTROSCOPY; SECONDARY STRUCTURES; CIRCULAR-DICHROISM; CYTOCHROME-C; H/D-EXCHANGE; PEPTIDES; PROTEINS;
D O I
10.1021/ja3119527
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Studying hydrogen/deuterium (HID) exchange in proteins can provide valuable insight on protein structure and dynamics. Several techniques are available for probing H/D exchange in the bulk solution, including NMR, mass spectroscopy, and Fourier transform infrared spectroscopy. However, probing HID exchange at interfaces is challenging because it requires surface-selective methods. Here, we introduce the combination of in situ chiral sum frequency generation (cSFG) spectroscopy and ab initio simulations of cSFG spectra as a powerful methodology to probe the dynamics of HID exchange at interfaces. This method is applied to characterize HID exchange in the antiparallel beta-sheet peptide LK7 beta. We report here for the first time that the rate of D-to-H exchange is about I order of magnitude faster than H-to-D exchange in the antiparallel structure at the air/water interface, which is consistent with the existing knowledge that 0 H/D dissociation in water is the rate-limiting step, and breaking the O-D bond is slower than breaking the O-H bond. The reported analysis also provides fundamental understanding of several vibrational modes and their couplings in peptide backbones that have been difficult to characterize by conventional methods, including Fermi resonances of various combinations of peptide vibrational modes such as amide I and amide II, C-N stretch, and N-H/N-D bending. These results demonstrate cSFG as a sensitive technique for probing the kinetics of HID exchange in proteins at interfaces, with high signal-to-noise N-H/N-D stretch bands that are free of background from the water O-H/O-D stretch.
引用
收藏
页码:3592 / 3598
页数:7
相关论文
共 58 条
[41]   Simultaneous monitoring of peptide aggregate distributions, structure, and kinetics using amide hydrogen exchange:: Application to Aβ(1-40) fibrillogenesis [J].
Qi, Wei ;
Zhang, Aming ;
Patel, Dhara ;
Lee, Sungmun ;
Harrington, Jamie L. ;
Zhao, Liming ;
Schaefer, David ;
Good, Theresa A. ;
Fernandez, Erik J. .
BIOTECHNOLOGY AND BIOENGINEERING, 2008, 100 (06) :1214-1227
[42]   FTIR spectra of solid poly-L-lysine in the stretching NH mode range [J].
Rozenberg, M. ;
Shoham, G. .
BIOPHYSICAL CHEMISTRY, 2007, 125 (01) :166-171
[43]   Structural origins of circular dichroism in surface second harmonic generation [J].
Simpson, GJ .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (07) :3398-3410
[44]   Molecular origins of the remarkable chiral sensitivity of second-order nonlinear optics [J].
Simpson, GJ .
CHEMPHYSCHEM, 2004, 5 (09) :1301-1310
[45]   Making "Sense" of DNA [J].
Stokes, Grace Y. ;
Gibbs-Davis, Julianne M. ;
Boman, Faith C. ;
Stepp, Brian R. ;
Condie, Allison G. ;
Nguyen, SonBinh T. ;
Geiger, Franz M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (24) :7492-+
[46]   Infrared spectroscopy of proteins and peptides in lipid bilayers [J].
Tamm, LK ;
Tatulian, SA .
QUARTERLY REVIEWS OF BIOPHYSICS, 1997, 30 (04) :365-429
[47]   Structural features of interferon-γ aggregation revealed by hydrogen exchange [J].
Tobler, SA ;
Fernandez, EJ .
PROTEIN SCIENCE, 2002, 11 (06) :1340-1352
[48]   DNA on Stage: Showcasing Oligonucleotides at Surfaces and Interfaces with Second Harmonic and Vibrational Sum Frequency Generation [J].
Walter, Stephanie R. ;
Geiger, Franz M. .
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2010, 1 (01) :9-15
[49]   TWO-DIMENSIONAL H-1-NMR STUDIES OF CYTOCHROME-C - HYDROGEN-EXCHANGE IN THE N-TERMINAL HELIX [J].
WAND, AJ ;
RODER, H ;
ENGLANDER, SW .
BIOCHEMISTRY, 1986, 25 (05) :1107-1114
[50]   Detection of chiral sum frequency generation vibrational spectra of proteins and peptides at interfaces in situ [J].
Wang, J ;
Chen, XY ;
Clarke, ML ;
Chen, Z .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (14) :4978-4983