Node-pore sensing: a robust, high-dynamic range method for detecting biological species

被引:32
作者
Balakrishnan, Karthik R. [1 ]
Anwar, George [1 ]
Chapman, Matthew R. [2 ]
Trongtuong Nguyen [3 ]
Kesavaraju, Anand [4 ]
Sohn, Lydia L. [1 ]
机构
[1] Univ Calif Berkeley, Dept Mech Engn, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Biophys Grad Grp, Berkeley, CA 94720 USA
[3] Univ Calif Berkeley, Berkeley, CA 94720 USA
[4] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA
关键词
SINGLE-MOLECULE; MONONUCLEAR-CELLS; ALPHA-HEMOLYSIN; NANOPORE; DNA; IDENTIFICATION; AMPLIFICATION; MICRORNAS; MEMBRANES; BINDING;
D O I
10.1039/c3lc41286e
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Resistive-pulse sensing (RPS), which is based on measuring the current pulse produced when a single particle transits a pore or channel, is an extremely versatile technique used to determine the size and concentration of cells and viruses and to detect single molecules. A major challenge to RPS is dynamic range: smaller particles in a heterogeneous sample can go undetected because of low signal-to-noise ratios (SNRs) and the fact that the pore size must be commensurate with that of the largest particles. Here, we describe a fundamentally different pore that provides an unprecedented dynamic detection range, from tens of nanometers to several microns in size, without the need for pre-sorting or filtration. Because of its unique geometry - nodes inserted along the channel - our pore produces distinct electronic signatures that overcome low SNRs. We demonstrate the power of our device by directly detecting and enumerating human immunodeficiency virus (HIV) in human plasma.
引用
收藏
页码:1302 / 1307
页数:6
相关论文
共 46 条
[1]   Cell Screening Using Resistive-Pulse Sensing [J].
Balakrishnan, Karthik ;
Sohn, Lydia L. .
LABORATORY METHODS IN CELL BIOLOGY: BIOCHEMISTRY AND CELL CULTURE, 2012, 112 :369-387
[2]   Resistive-pulse sensing - From microbes to molecules [J].
Bayley, H ;
Martin, CR .
CHEMICAL REVIEWS, 2000, 100 (07) :2575-2594
[3]   Stochastic sensors inspired by biology [J].
Bayley, H ;
Cremer, PS .
NATURE, 2001, 413 (6852) :226-230
[4]   SPECIFICITY OF POLYMERASE CHAIN AMPLIFICATION REACTIONS FOR HUMAN IMMUNODEFICIENCY VIRUS TYPE-1 DNA-SEQUENCES [J].
BELL, J ;
RATNER, L .
AIDS RESEARCH AND HUMAN RETROVIRUSES, 1989, 5 (01) :87-95
[5]   COUNTING POLYMERS MOVING THROUGH A SINGLE-ION CHANNEL [J].
BEZRUKOV, SM ;
VODYANOY, I ;
PARSEGIAN, VA .
NATURE, 1994, 370 (6487) :279-281
[6]   Structural organization of authentic, mature HIV-1 virions and cores [J].
Briggs, JAG ;
Wilk, T ;
Welker, R ;
Kräusslich, HG ;
Fuller, SD .
EMBO JOURNAL, 2003, 22 (07) :1707-1715
[7]   Continuous and Long-Term Volume Measurements with a Commercial Coulter Counter [J].
Bryan, Andrea K. ;
Engler, Alex ;
Gulati, Amneet ;
Manalis, Scott R. .
PLOS ONE, 2012, 7 (01)
[8]   A resistive-pulse sensor chip for multianalyte immunoassays [J].
Carbonaro, A ;
Sohn, LL .
LAB ON A CHIP, 2005, 5 (10) :1155-1160
[9]   Cell characterization using a protein-functionalized pore [J].
Carbonaro, Andrea ;
Mohanty, Swomitra K. ;
Huang, Haiyan ;
Godley, Lucy A. ;
Sohn, Lydia L. .
LAB ON A CHIP, 2008, 8 (09) :1478-1485
[10]  
Clarke J, 2009, NAT NANOTECHNOL, V4, P265, DOI [10.1038/NNANO.2009.12, 10.1038/nnano.2009.12]