Cryo-electron Microscopy Analysis of Structurally Heterogeneous Macromolecular Complexes

被引:20
作者
Jonic, Slavica [1 ]
机构
[1] Univ Paris 06, Sorbonne Univ, CNRS, IMPMC,IRD,UMR 7590,UMR 206, F-75005 Paris, France
来源
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL | 2016年 / 14卷
关键词
Cryo-electron microscopy; Single particle analysis; Macromolecular complexes; Heterogeneity; Structure; Flexibility; Conformational changes; Dynamics; CRYO-EM STRUCTURE; LIKELIHOOD-BASED CLASSIFICATION; SINGLE-PARTICLE RECONSTRUCTION; AB-INITIO RECONSTRUCTION; FATTY-ACID SYNTHASE; 3-DIMENSIONAL RECONSTRUCTION; ELECTRON-MICROSCOPY; ANGSTROM RESOLUTION; CONFORMATIONAL STATES; DISORDERED SPECIMENS;
D O I
10.1016/j.csbj.2016.10.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cryo-electron microscopy (cryo-EM) has for a long time been a technique of choice for determining structure of large and flexible macromolecular complexes that were difficult to study by other experimental techniques such as X-ray crystallography or nuclear magnetic resonance. However, a fast development of instruments and software for cryo-EM in the last decade has allowed that a large range of complexes can be studied by cryo-EM, and that their structures can be obtained at near-atomic resolution, including the structures of small complexes (e.g., membrane proteins) whose size was earlier an obstacle to cryo-EM. Image analysis to identify multiple coexisting structures in the same specimen (multiconformation reconstruction) is now routinely done both to solve structures at near-atomic resolution and to study conformational dynamics. Methods for multiconformation reconstruction and latest examples of their applications are the focus of this review. (C) 2016 The Author. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.
引用
收藏
页码:385 / 390
页数:6
相关论文
共 102 条
[1]   Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome [J].
Abeyrathne, Priyanka D. ;
Koh, Cha San ;
Grant, Timothy ;
Grigorieff, Nikolaus ;
Korostelev, Andrei A. .
ELIFE, 2016, 5
[2]   Horizontal membrane-intrinsic α-helices in the stator a-subunit of an F-type ATP synthase [J].
Allegretti, Matteo ;
Klusch, Niklas ;
Mills, Deryck J. ;
Vonck, Janet ;
Kuehlbrandt, Werner ;
Davies, Karen M. .
NATURE, 2015, 521 (7551) :237-+
[3]   Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector [J].
Allegretti, Matteo ;
Mills, Deryck J. ;
McMullan, Greg ;
Kuehlbrandt, Werner ;
Vonck, Janet .
ELIFE, 2014, 3
[4]  
Andén J, 2015, I S BIOMED IMAGING, P200, DOI 10.1109/ISBI.2015.7163849
[5]  
[Anonymous], 2012, INT TABLES CRYSTALLO
[6]   STRUCTURAL BIOLOGY Architecture of human mTOR complex 1 [J].
Aylett, Christopher H. S. ;
Sauer, Evelyn ;
Imseng, Stefan ;
Boehringer, Daniel ;
Hall, Michael N. ;
Ban, Nenad ;
Maier, Timm .
SCIENCE, 2016, 351 (6268) :48-52
[7]   Sampling the conformational space of the catalytic subunit of human γ-secretase [J].
Bai, Xiao-chen ;
Rajendra, Eeson ;
Yang, Guanghui ;
Shi, Yigong ;
Scheres, Sjors H. W. .
ELIFE, 2015, 4
[8]   An atomic structure of human γ-secretase [J].
Bai, Xiao-chen ;
Yan, Chuangye ;
Yang, Guanghui ;
Lu, Peilong ;
Ma, Dan ;
Sun, Linfeng ;
Zhou, Rui ;
Scheres, Sjors H. W. ;
Shi, Yigong .
NATURE, 2015, 525 (7568) :212-+
[9]   Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles [J].
Bai, Xiao-chen ;
Fernandez, Israel S. ;
McMullan, Greg ;
Scheres, Sjors H. W. .
ELIFE, 2013, 2
[10]   2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition [J].
Banerjee, Soojay ;
Bartesaghi, Alberto ;
Merk, Alan ;
Rao, Prashant ;
Bulfer, Stacie L. ;
Yan, Yongzhao ;
Green, Neal ;
Mroczkowski, Barbara ;
Neitz, R. Jeffrey ;
Wipf, Peter ;
Falconieri, Veronica ;
Deshaies, Raymond J. ;
Milne, Jacqueline L. S. ;
Huryn, Donna ;
Arkin, Michelle ;
Subramaniam, Sriram .
SCIENCE, 2016, 351 (6275) :871-875