Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp nov.

被引:76
作者
Lagier, Jean-Christophe [1 ]
El Karkouri, Khalid [1 ]
Thi-Tien Nguyen [1 ]
Armougom, Fabrice [1 ]
Raoult, Didier [1 ]
Fournier, Pierre-Edouard [1 ]
机构
[1] Aix Marseille Univ, Unite Rech Malad Infect & Trop Emergentes, Fac Med, Marseille, France
关键词
Anaerococcus senegalensis; genome; BACTERIA; PROPOSAL;
D O I
10.4056/sigs.2415480
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Anaerococcus senegalensis strain JC48(T) sp. nov. is the type strain of A. senegalensis sp. nov., a new species within the genus Anaerococcus. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. A. senegalensis is an obligate anaerobic coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,790,835 bp long genome (1 chromosome but no plasmid) contains 1,721 protein-coding and 53 RNA genes, including 5 rRNA genes.
引用
收藏
页码:116 / 125
页数:10
相关论文
共 24 条
[1]  
[Anonymous], BERGEYS MANUAL SYSTE
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]  
Euzeby J., 2010, INT J SYST EVOL MICR, V60, P469
[4]   Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov and Gallicola gen. nov for members of the genus Peptostreptococcus [J].
Ezaki, T ;
Kawamura, Y ;
Li, N ;
Li, ZY ;
Zhao, LC ;
Shu, SE .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1521-1528
[5]  
Garrity G.M., 2001, BERGEYS MAN SYST BAC, V2nd, P119, DOI [10.1007/978-0-387-21609-6_15, DOI 10.1007/978-0-387-21609-6_15]
[6]   PROPOSALS CONCERNING HIGHER TAXA OF BACTERIA [J].
GIBBONS, NE ;
MURRAY, RGE .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1978, 28 (01) :1-6
[7]   Topographical and Temporal Diversity of the Human Skin Microbiome [J].
Grice, Elizabeth A. ;
Kong, Heidi H. ;
Conlan, Sean ;
Deming, Clayton B. ;
Davis, Joie ;
Young, Alice C. ;
Bouffard, Gerard G. ;
Blakesley, Robert W. ;
Murray, Patrick R. ;
Green, Eric D. ;
Turner, Maria L. ;
Segre, Julia A. .
SCIENCE, 2009, 324 (5931) :1190-1192
[8]   Septic arthritis in a native joint due to Anaerococcus prevotii [J].
Jain, S. ;
Bui, V. ;
Spencer, C. ;
Yee, L. .
JOURNAL OF CLINICAL PATHOLOGY, 2008, 61 (06) :775-776
[9]   Burden of emerging anaerobes in the MALDI-TOF and 16S.rRNA gene sequencing era [J].
La Scola, Bernard ;
Fournier, Pierre-Edouard ;
Raoult, Didier .
ANAEROBE, 2011, 17 (03) :106-112
[10]   Complete genome sequence of Anaerococcus prevotii type strain (PC1T) [J].
LaButti, Kurt ;
Pukall, Ruediger ;
Steenblock, Katja ;
Del Rio, Tijana Glavina ;
Tice, Hope ;
Copeland, Alex ;
Cheng, Jan-Fang ;
Lucas, Susan ;
Chen, Feng ;
Nolan, Matt ;
Bruce, David ;
Goodwin, Lynne ;
Pitluck, Sam ;
Ivanova, Natalia ;
Mavromatis, Konstantinos ;
Ovchinnikova, Galina ;
Pati, Amrita ;
Chen, Amy ;
Palaniappan, Krishna ;
Land, Miriam ;
Hauser, Loren ;
Chang, Yun-Juan ;
Jeffries, Cynthia D. ;
Chain, Patrick ;
Saunders, Elizabeth ;
Brettin, Thomas ;
Detter, John C. ;
Han, Cliff ;
Goeker, Markus ;
Bristow, Jim ;
Eisen, Jonathan A. ;
Markowitz, Victor ;
Hugenholtz, Philip ;
Kyrpides, Nikos C. ;
Klenk, Hans-Peter ;
Lapidus, Alla .
STANDARDS IN GENOMIC SCIENCES, 2009, 1 (02) :159-165