TACO produces robust multisample transcriptome assemblies from RNA-seq

被引:0
作者
Niknafs, Yashar S. [1 ,2 ]
Pandian, Balaji [1 ]
Iyer, Hariharan K. [3 ]
Chinnaiyan, Arul M. [1 ,2 ,4 ,5 ,6 ,7 ]
Iyer, Matthew K. [1 ]
机构
[1] Univ Michigan, Michigan Ctr Translat Pathol, Ann Arbor, MI 48107 USA
[2] Univ Michigan, Dept Cellular & Mol Biol, Ann Arbor, MI 48107 USA
[3] Colorado State Univ, Dept Stat, Ft Collins, CO USA
[4] Univ Michigan, Dept Pathol, Ann Arbor, MI 48107 USA
[5] Univ Michigan, Howard Hughes Med Inst, Ann Arbor, MI 48107 USA
[6] Univ Michigan, Comprehens Canc Ctr, Ann Arbor, MI 48107 USA
[7] Univ Michigan, Dept Urol, Ann Arbor, MI 48107 USA
关键词
LONG NONCODING RNAS; HUMAN GENOME; REVEALS; RECONSTRUCTION; ANNOTATION; EXPRESSION; STRINGTIE; LANDSCAPE; PROJECT; CATALOG;
D O I
10.1038/NMETH.4078
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
O Accurate transcript structure and abundance inference from RNA sequencing (RNA-seq) data is foundational for molecular discovery. Here we present TACO, a computational method to reconstruct a consensus transcriptome from multiple RNA-seq data sets. TACO employs novel change-point detection to demarcate transcript start and end sites, leading to improved reconstruction accuracy compared with other tools in its class. The tool is available at http://tacorna.github.io and can be readily incorporated into RNA-seq analysis workflows.
引用
收藏
页码:68 / 70
页数:3
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