Describing intrinsically disordered proteins at atomic resolution by NMR

被引:165
作者
Jensen, Malene Ringkjobing [1 ]
Ruigrok, Rob W. H. [2 ]
Blackledge, Martin [1 ]
机构
[1] UJF, Inst Biol Struct Jean Pierre Ebel, CEA, CNRS,UMR 5075, F-38027 Grenoble, France
[2] UJF, EMBL, CNRS, Unit Virus Host Cell Interact,UMI 3265, F-38042 Grenoble 9, France
关键词
RESIDUAL DIPOLAR COUPLINGS; PARAMAGNETIC RELAXATION ENHANCEMENT; MOLECULAR-DYNAMICS SIMULATIONS; PARTIALLY FOLDED PROTEINS; ANGLE X-RAY; ALPHA-SYNUCLEIN; CHEMICAL-SHIFTS; SECONDARY STRUCTURE; UNFOLDED PROTEINS; LEVEL CHARACTERIZATION;
D O I
10.1016/j.sbi.2013.02.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There is growing interest in the development of physical methods to study the conformational behaviour and biological activity of intrinsically disordered proteins (IDPs). In this review recent advances in the elucidation of quantitative descriptions of disordered proteins from nuclear magnetic resonance spectroscopy are presented. Ensemble approaches are particularly well adapted to map the conformational energy landscape sampled by the protein at atomic resolution. Significant advances in development of calibrated approaches to the statistical representation of the conformational behaviour of IDPs are presented, as well as applications to some biologically important systems where disorder plays a crucial role.
引用
收藏
页码:426 / 435
页数:10
相关论文
共 85 条
  • [61] Mapping the Potential Energy Landscape of Intrinsically Disordered Proteins at Amino Acid Resolution
    Ozenne, Valery
    Schneider, Robert
    Yao, Mingxi
    Huang, Jie-rong
    Salmon, Loic
    Zweckstetter, Markus
    Jensen, Malene Ringkjobing
    Blackledge, Martin
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (36) : 15138 - 15148
  • [62] Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables
    Ozenne, Valery
    Bauer, Frederic
    Salmon, Loic
    Huang, Jie-rong
    Jensen, Malene Ringkjobing
    Segard, Stephane
    Bernado, Pau
    Charavay, Celine
    Blackledge, Martin
    [J]. BIOINFORMATICS, 2012, 28 (11) : 1463 - 1470
  • [63] NMR Characterization of Long-Range Order in Intrinsically Disordered Proteins
    Salmon, Loic
    Nodet, Gabrielle
    Ozenne, Valery
    Yin, Guowei
    Jensen, Malene Ringkjobing
    Zweckstetter, Markus
    Blackledge, Martin
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (24) : 8407 - 8418
  • [64] Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy
    Schneider, Robert
    Huang, Jie-rong
    Yao, Mingxi
    Communie, Guillaume
    Ozenne, Valery
    Mollica, Luca
    Salmon, Loic
    Jensen, Malene Ringkjobing
    Blackledge, Martin
    [J]. MOLECULAR BIOSYSTEMS, 2012, 8 (01) : 58 - 68
  • [65] Sequence-dependent correction of random coil NMR chemical shifts
    Schwarzinger, S
    Kroon, GJA
    Foss, TR
    Chung, J
    Wright, PE
    Dyson, HJ
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (13) : 2970 - 2978
  • [66] Atomic-Level Characterization of the Ensemble of the Aβ(1-42) Monomer in Water Using Unbiased Molecular Dynamics Simulations and Spectral Algorithms
    Sgourakis, Nikolaos G.
    Merced-Serrano, Myrna
    Boutsidis, Christos
    Drineas, Petros
    Du, Zheming
    Wang, Chunyu
    Garcia, Angel E.
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2011, 405 (02) : 570 - 583
  • [67] Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology
    Shen, Yang
    Bax, Ad
    [J]. JOURNAL OF BIOMOLECULAR NMR, 2007, 38 (04) : 289 - 302
  • [68] Structural characterization of intrinsically disordered proteins by the combined use of NMR and SAXS
    Sibille, Nathalie
    Bernado, Pau
    [J]. BIOCHEMICAL SOCIETY TRANSACTIONS, 2012, 40 : 955 - 962
  • [69] Analysis of main chain torsion angles in proteins: Prediction of NMR coupling constants for native and random coil conformations
    Smith, LJ
    Bolin, KA
    Schwalbe, H
    MacArthur, MW
    Thornton, JM
    Dobson, CM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1996, 255 (03) : 494 - 506
  • [70] Mechanism of coupled folding and binding of an intrinsically disordered protein
    Sugase, Kenji
    Dyson, H. Jane
    Wright, Peter E.
    [J]. NATURE, 2007, 447 (7147) : 1021 - U11