Changes in Vaginal Microbiome in Pregnant and Nonpregnant Women with Bacterial Vaginosis: Toward Microbiome Diagnostics?

被引:9
作者
Mohamed, Ibrahim [1 ,2 ]
Zakeer, Samira [2 ]
Azab, Marwa [2 ]
Hanora, Amro [2 ]
机构
[1] Med Union Pharmaceut Co Main Factory, Qual Control Dept, Ismailia, Egypt
[2] Suez Canal Univ, Dept Microbiol & Immunol, Fac Pharm, Ismailia 41522, Egypt
关键词
metagenomics; vaginal microbiome; bacterial vaginosis; second-generation sequencing; diagnostics; GARDNERELLA-VAGINALIS; ATOPOBIUM-VAGINAE; SKIN MICROBIOME; ASSOCIATION; COMMUNITY;
D O I
10.1089/omi.2020.0096
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Bacterial vaginosis (BV) is highly common, adversely affecting the health of millions of women. New therapeutic targets and diagnostics are urgently needed for BV. Microbiome research offers new prospects in this context. We report here original findings on changes in the vaginal microbiome in pregnant and nonpregnant women with BV. Reproductive age women were recruited for this study after a clinical examination. The total sample (N = 33) included four study groups: (1) healthy nonpregnant women (n = 9), (2) nonpregnant women with symptomatic BV (n = 11), (3) healthy pregnant women without BV (n = 6), and (4) pregnant women with symptomatic BV (N = 7). The vaginal microbiota in healthy women was less diverse, with dominance of a single genus,Lactobacillus. Six major phyla appeared upon taxonomic analysis of the bacterial sequences: Firmicutes, Actinobacteria, Proteobacteria, Tenericutes, Bacteroidetes, and Fusobacteria. For instance, Firmicutes had a significantly higher abundance (98.3%) in the nonpregnant healthy group and 94.3% in pregnant healthy group, compared with nonpregnant (49.7%) and pregnant (67%) women with BV (p = 0.003). Moreover, women with BV had significant increases in representation of Actinobacteria, Fusobacteria, and Bacteroidetes(p = 0.0003, 0.004, and 0.01, respectively). Although theLactobacillusgenus was predominant in healthy women,Gardnerella,Atopobium,Sneathia, andPrevotellasignificantly increased in nonpregnant women with BV (p = 0.001, 0.014, 0.004, and 0.012, respectively). Dysbiosis ofLactobacillusin pregnant women with BV was accompanied by increased prevalence of theStreptococcusgenus. These findings contribute new insights toward microbiome diagnostics and therapeutics innovation in BV.
引用
收藏
页码:602 / 614
页数:13
相关论文
共 55 条
[1]   Anaerobes and Bacterial Vaginosis in Pregnancy: Virulence Factors Contributing to Vaginal Colonisation [J].
Africa, Charlene W. J. ;
Nel, Janske ;
Stemmet, Megan .
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2014, 11 (07) :6979-7000
[2]  
Agarwala R, 2018, NUCLEIC ACIDS RES, V46, pD8, DOI [10.1093/nar/gks1189, 10.1093/nar/gkx1095, 10.1093/nar/gkq1172]
[3]   Human Nasal Microbiome as Characterized by Metagenomics Differs Markedly Between Rural and Industrial Communities in Egypt [J].
Ahmed, Nada ;
Mahmoud, Nora Fahmy ;
Solyman, Samar ;
Hanora, Amro .
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 2019, 23 (11) :573-582
[4]   Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments [J].
Almeida, Alexandre ;
Mitchell, Alex L. ;
Tarkowska, Aleksandra ;
Finn, Robert D. .
GIGASCIENCE, 2018, 7 (05)
[5]   NONSPECIFIC VAGINITIS - DIAGNOSTIC-CRITERIA AND MICROBIAL AND EPIDEMIOLOGIC ASSOCIATIONS [J].
AMSEL, R ;
TOTTEN, PA ;
SPIEGEL, CA ;
CHEN, KCS ;
ESCHENBACH, D ;
HOLMES, KK .
AMERICAN JOURNAL OF MEDICINE, 1983, 74 (01) :14-22
[6]  
Anderson MJ, 2001, AUSTRAL ECOL, V26, P32, DOI 10.1111/j.1442-9993.2001.01070.pp.x
[7]   ESSAY What are the consequences of the disappearing human microbiota? [J].
Blaser, Martin J. ;
Falkow, Stanley .
NATURE REVIEWS MICROBIOLOGY, 2009, 7 (12) :887-894
[8]   Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 [J].
Bolyen, Evan ;
Rideout, Jai Ram ;
Dillon, Matthew R. ;
Bokulich, NicholasA. ;
Abnet, Christian C. ;
Al-Ghalith, Gabriel A. ;
Alexander, Harriet ;
Alm, Eric J. ;
Arumugam, Manimozhiyan ;
Asnicar, Francesco ;
Bai, Yang ;
Bisanz, Jordan E. ;
Bittinger, Kyle ;
Brejnrod, Asker ;
Brislawn, Colin J. ;
Brown, C. Titus ;
Callahan, Benjamin J. ;
Caraballo-Rodriguez, Andres Mauricio ;
Chase, John ;
Cope, Emily K. ;
Da Silva, Ricardo ;
Diener, Christian ;
Dorrestein, Pieter C. ;
Douglas, Gavin M. ;
Durall, Daniel M. ;
Duvallet, Claire ;
Edwardson, Christian F. ;
Ernst, Madeleine ;
Estaki, Mehrbod ;
Fouquier, Jennifer ;
Gauglitz, Julia M. ;
Gibbons, Sean M. ;
Gibson, Deanna L. ;
Gonzalez, Antonio ;
Gorlick, Kestrel ;
Guo, Jiarong ;
Hillmann, Benjamin ;
Holmes, Susan ;
Holste, Hannes ;
Huttenhower, Curtis ;
Huttley, Gavin A. ;
Janssen, Stefan ;
Jarmusch, Alan K. ;
Jiang, Lingjing ;
Kaehler, Benjamin D. ;
Bin Kang, Kyo ;
Keefe, Christopher R. ;
Keim, Paul ;
Kelley, Scott T. ;
Knights, Dan .
NATURE BIOTECHNOLOGY, 2019, 37 (08) :852-857
[9]   The association of Atopobium vaginae and Gardnerella vaginalis with bacterial vaginosis and recurrence after oral metronidazole therapy [J].
Bradshaw, C. S. ;
Tabrizi, S. N. ;
Fairley, C. K. ;
Morton, A. N. ;
Rudland, E. ;
Garland, S. M. .
JOURNAL OF INFECTIOUS DISEASES, 2006, 194 (06) :828-836
[10]   Detection of Atopobium vaginae in postmenopausal worrien by cultivation-independent methods warrants further investigation [J].
Burton, JP ;
Devillard, E ;
Cadieux, PA ;
Hammond, JA ;
Reid, G .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (04) :1829-1831