Orchestration of Cloud Genomic Services

被引：0
作者：
Reali, Gianluca [1 ]
Femminella, Mauro [1 ]
Felicetti, Luca [1 ]
Pergolesi, Matteo [1 ]
机构：
[1] Univ Perugia, CNIT, Dept Engn, Res Unit, Perugia, Italy
来源：
2019 ELEVENTH INTERNATIONAL CONFERENCE ON UBIQUITOUS AND FUTURE NETWORKS (ICUFN 2019) | 2019年
基金：
欧盟地平线“2020”;
关键词：
Cloud genomics; SDN; NFV; network caching; signaling; resource management;
D O I：
10.1109/icufn.2019.8806115
中图分类号：
TP18 [人工智能理论];
学科分类号：
081104 ; 0812 ; 0835 ; 1405 ;
摘要：
The amount of resources necessary for genome processing services in clouds is huge. The introduction of suitable service orchestration procedures in cloud networks is therefore essential. The current achievements on SDN and NFV for cloud management are a valuable starting point for research. In this paper, we consider different classes of genome processing services and, for each of them, formulate an integer linear programming problem. The proposed solutions leverage network replacement caching, which is a key element for improving scalability of service deployment all the optimization strategies. Results show significant reduction of exchanged traffic volume and transfer time.
引用
收藏
页码：494 / 499
页数：6
相关论文
共 18 条
  • [1] [Anonymous], 2004, NATURE, V431
  • [2] Chan C., 2006, MATH PROGR OR630 FAL
  • [3] Church P.C., 2014, IEEE T SERVICES COMP, V7
  • [4] ETSI ISG NFV, 2014, NFVMAN001V111 ETSI G
  • [5] Femminella M., 2014, IEEE NCCA
  • [6] Femminella M, 2017, 2017 IEEE CONFERENCE ON NETWORK SOFTWARIZATION (IEEE NETSOFT)
  • [7] Biomedical Cloud Computing With Amazon Web Services
    Fusaro, Vincent A.
    Patil, Prasad
    Gafni, Erik
    Wall, Dennis P.
    Tonellato, Peter J.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (08)
  • [8] Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets
    Heath, Allison P.
    Greenway, Matthew
    Powell, Raymond
    Spring, Jonathan
    Suarez, Rafael
    Hanley, David
    Bandlamudi, Chai
    McNerney, Megan E.
    White, Kevin P.
    Grossman, Robert L.
    [J]. JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2014, 21 (06) : 969 - 975
  • [9] STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud
    Karczewski, Konrad J.
    Fernald, Guy Haskin
    Martin, Alicia R.
    Snyder, Michael
    Tatonetti, Nicholas P.
    Dudley, Joel T.
    [J]. PLOS ONE, 2014, 9 (01):
  • [10] Kreuts D., 2015, P IEEE, V103
12