SPECTRa: The deposition and validation of primary chemistry research data in digital repositories

被引:38
作者
Downing, Jim [1 ]
Murray-Rust, Peter [1 ]
Tonge, Alan P. [1 ]
Morgan, Peter [2 ]
Rzepa, Henry S. [3 ]
Cotterill, Fiona [4 ]
Day, Nick [1 ]
Harvey, Matt J. [5 ]
机构
[1] Univ Cambridge, Dept Chem, Unilever Ctr Mol Informat, Cambridge CB2 1EW, England
[2] Univ Cambridge, Cambridge Univ Lib, Cambridge CB3 9DR, England
[3] Univ London Imperial Coll Sci Technol & Med, Dept Chem, London SW7 2AY, England
[4] Univ London Imperial Coll Sci Technol & Med, Imperial Coll Lib, London SW7 2AZ, England
[5] Univ London Imperial Coll Sci Technol & Med, High Performance Comp Unit, ICT, London SW7 2AZ, England
关键词
D O I
10.1021/ci7004737
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The SPECTRa (Submission, Preservation and Exposure of Chemistry Teaching and Research Data) project has investigated the practices of chemists in archiving and disseminating primary chemical data from academic research laboratories. To redress the loss of the large amount of data never archived or disseminated, we have developed software for data publication into departmental and institutional Open Access digital repositories (DSpace). Data adhering to standard formats in selected disciplines (crystallography, NMR, computational chemistry) is transformed to XML (CML, Chemical Markup Language) which provides added validation. Context-specific chemical metadata and persistent Handle identifiers are added to enable long-term data reuse. It was found essential to provide an embargo mechanism, and policies for operating this and other processes are presented.
引用
收藏
页码:1571 / 1581
页数:11
相关论文
共 53 条
[1]  
ADAMS S, 2006, JNI INCHI WRAPPER
[2]  
ALLEN FH, 2006, COMPREHENSIVE MED 2, V3, P389
[3]  
[Anonymous], JMOL OPEN SOURCE JAV
[4]  
Bailey Jr CW, 2005, OPEN ACCESS BIBLIOGR
[5]   Structural reassignment of obtusallenes V, VI, and VII by GIAO-based density functional prediction [J].
Braddock, D. Christopher ;
Rzepa, Henry S. .
JOURNAL OF NATURAL PRODUCTS, 2008, 71 (04) :728-730
[6]  
Brittain J., 2007, TOMCAT DEFINITIVE GU, V2nd
[7]  
Burgi H. B., 1994, STRUCTURE CORRELATIO, V1
[8]  
BURGI HB, 1994, STRUCTURE CORRELATIO, V2
[9]   METS: The Metadata Encoding and Transmission Standard [J].
Cantara, Linda .
CATALOGING & CLASSIFICATION QUARTERLY, 2005, 40 (3-4) :237-253
[10]   HYPERACTIVE MOLECULES AND THE WORLD-WIDE-WEB INFORMATION-SYSTEM [J].
CASHER, O ;
CHANDRAMOHAN, GK ;
HARGREAVES, MJ ;
LEACH, C ;
MURRAYRUST, P ;
RZEPA, HS ;
SAYLE, R ;
WHITAKER, BJ .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1995, (01) :7-11