Crystal structure of a secreted lipase from Gibberella zeae reveals a novel "double-lock" mechanism

被引:22
作者
Lou, Zhiyong [1 ]
Li, Ming [2 ]
Sun, Yuna [3 ]
Liu, Ye [2 ]
Liu, Zheng [2 ]
Wu, Wenping [2 ]
Rao, Zihe [1 ,3 ]
机构
[1] Tsinghua Univ, Struct Biol Lab, Beijing 100084, Peoples R China
[2] Novozymes China, Beijing 100085, Peoples R China
[3] Chinese Acad Sci, Inst Biophys, Natl Lab Biomacromol, Beijing 100101, Peoples R China
基金
中国国家自然科学基金;
关键词
lipase; Gibberella zeae; crystal structure; mechanism; inhibitor; INTERFACIAL ACTIVATION; MIXED MICELLES; TRIAD FORMS; SOFTWARE; SEQUENCE; BINDING; TOOLS; MODEL; SITE;
D O I
10.1007/s13238-010-0094-y
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Fusarium graminearum (sexual stage: Gibberella zeae) is the causative agent of Fusarium Head Blight (FHB), which is one of the most destructive plant disease of cereals, accounting for high grain yield losses, especially for wheat and maize. Like other fungal pathogens, several extracellular enzymes secreted by G. zeae are known to be involved in host infection. Among these secreted lipases, G. zeae lipase (GZEL), which is encoded by the FGL1 gene, was demonstrated to be crucial to G. zeae pathogenicity. However, the precise mechanism of GZEL remains unclear due to a lack of detailed structural information. In this study, we report the crystal structure of GZEL at the atomic level. The structure of GZEL displays distinct structural differences compared to reported homologues and indicates a unique "double lock" enzymatic mechanism. To gain insight into substrate/inhibitor recognition, we proposed a model of GZEL in complex with substrate and the lipase inhibitor ebelactone B (based on the reported structures of GZEL homologues), which defines possible substrate binding sites within the catalytic cleft and suggests an "anti sn-l" binding mode. These results pave the way to elucidating the mechanism of GZEL and thus provide clues for the design of anti-FHB inhibitors.
引用
收藏
页码:760 / 770
页数:11
相关论文
共 37 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   Management and resistance in wheat and barley to Fusarium head blight [J].
Bai, GH ;
Shaner, G .
ANNUAL REVIEW OF PHYTOPATHOLOGY, 2004, 42 :135-161
[3]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[4]   A SERINE PROTEASE TRIAD FORMS THE CATALYTIC CENTER OF A TRIACYLGLYCEROL LIPASE [J].
BRADY, L ;
BRZOZOWSKI, AM ;
DEREWENDA, ZS ;
DODSON, E ;
DODSON, G ;
TOLLEY, S ;
TURKENBURG, JP ;
CHRISTIANSEN, L ;
HUGEJENSEN, B ;
NORSKOV, L ;
THIM, L ;
MENGE, U .
NATURE, 1990, 343 (6260) :767-770
[5]  
BROCKMAN HL, 1973, J BIOL CHEM, V248, P4965
[6]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[7]   A MODEL FOR INTERFACIAL ACTIVATION IN LIPASES FROM THE STRUCTURE OF A FUNGAL LIPASE-INHIBITOR COMPLEX [J].
BRZOZOWSKI, AM ;
DEREWENDA, U ;
DEREWENDA, ZS ;
DODSON, GG ;
LAWSON, DM ;
TURKENBURG, JP ;
BJORKLING, F ;
HUGEJENSEN, B ;
PATKAR, SA ;
THIM, L .
NATURE, 1991, 351 (6326) :491-494
[8]   Structural origins of the interfacial activation in Thermomyces (Humicola) lanuginosa lipase [J].
Brzozowski, AM ;
Savage, H ;
Verma, CS ;
Turkenburg, JP ;
Lawson, DM ;
Svendsen, A ;
Patkar, S .
BIOCHEMISTRY, 2000, 39 (49) :15071-15082
[9]  
Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34
[10]  
DeLano W.L., 2002, The PyMOL molecular graphics system