Amycolatopsis marina sp nov., an actinomycete isolated from an ocean sediment

被引：50

作者：

Bian, Jiang ^{[1
,2
,3
]}

Li, Yan ^{[4
]}

Wang, Jian ^{[1
,2
,3
]}

Song, Fu-Hang ^{[2
]}

Liu, Mei ^{[2
]}

Dai, Huan-Qin ^{[2
]}

Ren, Biao ^{[2
,3
]}

Gao, Hong ^{[2
]}

Hu, Xinling ^{[2
]}

Liu, Zhi-Heng ^{[2
]}

Li, Wen-Jun ^{[1
,4
]}

Zhang, Li-Xin ^{[1
,2
,5
,6
]}

机构：

[1] Chinese Acad Sci, S China Sea Inst Oceanol, Guangzhou 510301, Guangdong, Peoples R China

[2] Chinese Acad Sci, Inst Microbiol, Beijing 100101, Peoples R China

[3] Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China

[4] Yunnan Univ, Yunnan Inst Microbiol, Kunming 650091, Yunnan, Peoples R China

[5] Chinese Acad Sci, Guangzhou Inst Biomed & Hlth, Guangzhou 510663, Guangdong, Peoples R China

[6] SynerZ Pharmaceut Inc, Lexington, MA 02421 USA

来源：

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 2009年 / 59卷

关键词：

PERFORMANCE LIQUID-CHROMATOGRAPHY; GENUS AMYCOLATOPSIS; SEQUENCE ALIGNMENT; SOIL; IDENTIFICATION; ACID; PSEUDONOCARDIA; GENERA; CHINA;

D O I：

10.1099/ijs.0.000026-0

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

A Gram-positive, aerobic, non-motile actinobacterium, designated strain Ms392A(T), was isolated from an ocean-sediment sample collected from the South China Sea. The isolate contained chemical markers that supported chemotaxonomic assignment to the genus Amycolatopsis. On the basis of an analysis of 16S rRNA gene sequence similarities, strain Ms392A(T) represents a novel subclade within the genus Amycolatopsis, with Amycolatopsis palatopharyngis 1BDZ(T) as its closest phylogenetic neighbour (99.4% similarity). However, DNA-DNA hybridization demonstrated that strain Ms392A(T) was distinct from A. palatopharyngis AS 4.1729(T) (48.6% relatedness). The polyphasic analysis demonstrated that the ocean isolate can be clearly distinguished from recognized species of the genus Amycolatopsis. Therefore, strain Ms392A(T) represents a novel species of the genus Amycolatopsis, for which the name Amycolatopsis marina sp. nov. is proposed. The type strain is Ms392A(T) (-CGMCC 4.3568(T) =NBRC 104263(T)).

引用

页码：477 / 481

页数：5

共 44 条

[1] Amycolatopsis saalfeldensis sp nov., a novel actinomycete isolated from a medieval alum slate mine [J].

Carlsohn, Marc Rene ;

Groth, Ingrid ;

Tan, Geok Yuan Annie ;

Schuetze, Barbara ;

Saluz, Hans-Peter ;

Munder, Thomas ;

Yang, Jun ;

Wink, Joachim ;

Goodfellow, Michael .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :1640-1646

[2]

COLLINS MD, 1980, J APPL BACTERIOL, V48, P459, DOI 10.1111/j.1365-2672.1980.tb01036.x

[3] DISTRIBUTION OF MENAQUINONES IN ACTINOMYCETES AND CORYNEBACTERIA [J].

COLLINS, MD ;

PIROUZ, T ;

GOODFELLOW, M ;

MINNIKIN, DE .

JOURNAL OF GENERAL MICROBIOLOGY, 1977, 100 (JUN) :221-230

[4]

Demain AL, 2005, NATURAL PRODUCTS: DRUG DISCOVERY AND THERAPEUTIC MEDICINE, P3, DOI 10.1007/978-1-59259-976-9_1

[5]

EMBLEY TM, 1988, SYST APPL MICROBIOL, V11, P44

[6]

FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x

[7]

Felsenstein J, 1993, PHYLIP (phylogeny inference package)

[8] Amycolatopsis sacchari sp nov., a moderately thermophilic actinomycete isolated from vegetable matter [J].

Goodfellow, M ;

Kim, SB ;

Minnikin, DE ;

Whitehead, D ;

Zhou, ZH ;

Mattinson-Rose, AD .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :187-193

[9] NOCARDIA-COELIACA, NOCARDIA-AUTOTROPHICA, AND NOCARDIN STRAIN [J].

GORDON, RE ;

BARNETT, DA ;

HANDERHAN, JE ;

PANG, CHN .

INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1974, 24 (01) :54-63

[10] Five novel Kitasatospora species from soil:: Kitasatospora arboriphila sp nov., K-gansuensis sp nov., K-nipponensis sp nov., K-paranensis sp nov and K-terrestris sp nov. [J].

Groth, I ;

Rodríguez, C ;

Schütze, B ;

Schmitz, P ;

Leistner, E ;

Goodfellow, M .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2004, 54 :2121-2129

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