Real-time magnetic actuation of DNA nanodevices via modular integration with stiff micro-levers

被引:86
作者
Lauback, Stephanie [1 ,5 ]
Mattioli, Kara R. [1 ,6 ]
Marras, Alexander E. [2 ,7 ]
Armstrong, Maxim [2 ,8 ]
Rudibaugh, Thomas P. [3 ,9 ]
Sooryakumar, Ratnasingham [1 ]
Castro, Carlos E. [2 ,4 ]
机构
[1] Ohio State Univ, Dept Phys, 191 W Woodruff Ave, Columbus, OH 43210 USA
[2] Ohio State Univ, Dept Mech & Aerosp Engn, 201 W 19th Ave, Columbus, OH 43210 USA
[3] Ohio State Univ, Dept Chem & Biomol Engn, 151 W Woodruff Ave, Columbus, OH 43210 USA
[4] Ohio State Univ, Biophys Grad Program, Columbus, OH 43210 USA
[5] Juniata Coll, Dept Phys & Engn Phys, 1700 Moore St, Huntingdon, PA 16652 USA
[6] Univ Michigan, Dept Phys, 450 Church St, Ann Arbor, MI 48109 USA
[7] Univ Chicago, Inst Mol Engn, 5640 S Ellis Ave, Chicago, IL 60637 USA
[8] Univ Calif Berkeley, Dept Bioengn, 648 Stanley Hall MC 1762, Berkeley, CA 94720 USA
[9] North Carolina State Univ, Dept Chem & Biomol Engn, 911 Partners Way, Raleigh, NC 27606 USA
基金
美国国家科学基金会;
关键词
THERMAL FLUCTUATIONS; ORIGAMI; MANIPULATION; DESIGN; SHAPES; MOTION;
D O I
10.1038/s41467-018-03601-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA nanotechnology has enabled complex nanodevices, but the ability to directly manipulate systems with fast response times remains a key challenge. Current methods of actuation are relatively slow and only direct devices into one or two target configurations. Here we report an approach to control DNA origami assemblies via externally applied magnetic fields using a low-cost platform that enables actuation into many distinct configurations with sub-second response times. The nanodevices in these assemblies are manipulated via mechanically stiff micron-scale lever arms, which rigidly couple movement of a micron size magnetic bead to reconfiguration of the nanodevice while also enabling direct visualization of the conformation. We demonstrate control of three assemblies-a rod, rotor, and hinge-at frequencies up to several Hz and the ability to actuate into many conformations. This level of spatiotemporal control over DNA devices can serve as a foundation for real-time manipulation of molecular and atomic systems.
引用
收藏
页数:11
相关论文
共 51 条
[1]   Self-assembly of a nanoscale DNA box with a controllable lid [J].
Andersen, Ebbe S. ;
Dong, Mingdong ;
Nielsen, Morten M. ;
Jahn, Kasper ;
Subramani, Ramesh ;
Mamdouh, Wael ;
Golas, Monika M. ;
Sander, Bjoern ;
Stark, Holger ;
Oliveira, Cristiano L. P. ;
Pedersen, Jan Skov ;
Birkedal, Victoria ;
Besenbacher, Flemming ;
Gothelf, Kurt V. ;
Kjems, Jorgen .
NATURE, 2009, 459 (7243) :73-U75
[2]   Protein components for nanodevices [J].
Astier, Y ;
Bayley, H ;
Howorka, S .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2005, 9 (06) :576-584
[3]   Cryo-EM structure of a 3D DNA-origami object [J].
Bai, Xiao-chen ;
Martin, Thomas G. ;
Scheres, Sjors H. W. ;
Dietz, Hendrik .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (49) :20012-20017
[4]   Mechanical design of DNA nanostructures [J].
Castro, Carlos E. ;
Su, Hai-Jun ;
Marras, Alexander E. ;
Zhou, Lifeng ;
Johnson, Joshua .
NANOSCALE, 2015, 7 (14) :5913-5921
[5]   Physical Properties of Polymorphic Yeast Prion Amyloid Fibers [J].
Castro, Carlos E. ;
Dong, Jijun ;
Boyce, Mary C. ;
Lindquist, Susan ;
Lang, Matthew J. .
BIOPHYSICAL JOURNAL, 2011, 101 (02) :439-448
[6]   A primer to scaffolded DNA origami [J].
Castro, Carlos Ernesto ;
Kilchherr, Fabian ;
Kim, Do-Nyun ;
Shiao, Enrique Lin ;
Wauer, Tobias ;
Wortmann, Philipp ;
Bathe, Mark ;
Dietz, Hendrik .
NATURE METHODS, 2011, 8 (03) :221-229
[7]  
Cha TG, 2014, NAT NANOTECHNOL, V9, P39, DOI [10.1038/NNANO.2013.257, 10.1038/nnano.2013.257]
[8]   Patterned time-orbiting potentials for the confinement and assembly of magnetic dipoles [J].
Chen, A. ;
Sooryakumar, R. .
SCIENTIFIC REPORTS, 2013, 3
[9]   On-Chip Manipulation of Protein-Coated Magnetic Beads via Domain-Wall Conduits [J].
Donolato, Marco ;
Vavassori, Paolo ;
Gobbi, Marco ;
Deryabina, Maria ;
Hansen, Mikkel F. ;
Metlushko, Vitali ;
Ilic, Bojan ;
Cantoni, Matteo ;
Petti, Daniela ;
Brivio, Stefano ;
Bertacco, Riccardo .
ADVANCED MATERIALS, 2010, 22 (24) :2706-+
[10]   Rapid prototyping of 3D DNA-origami shapes with caDNAno [J].
Douglas, Shawn M. ;
Marblestone, Adam H. ;
Teerapittayanon, Surat ;
Vazquez, Alejandro ;
Church, George M. ;
Shih, William M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 (15) :5001-5006