Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

被引:151
作者
Adams, Clare I. M. [1 ]
Knapp, Michael [1 ]
Gemmell, Neil J. [1 ]
Jeunen, Gert-Jan [1 ]
Bunce, Michael [2 ]
Lamare, Miles D. [3 ]
Taylor, Helen R. [1 ]
机构
[1] Univ Otago, Dept Anat, 270 Great King St, Dunedin 9016, Otago, New Zealand
[2] Curtin Univ, Sch Mol & Life Sci, Trace & Environm DNA TrEnD Lab, Perth, WA 6102, Australia
[3] Univ Otago, Dept Marine Sci, 310 Castle St, Dunedin 9016, Otago, New Zealand
关键词
sampling methodology; mtDNA; mitochondrial DNA; conservation; biodiversity; populations; genetics; eDNA; BOTTLE-NOSED DOLPHINS; DROPLET DIGITAL PCR; GREAT CRESTED NEWT; CHAIN-REACTION PCR; REAL-TIME PCR; MITOCHONDRIAL-DNA; NATURAL-POPULATIONS; TURSIOPS-TRUNCATUS; COPY NUMBER; NUCLEAR;
D O I
10.3390/genes10030192
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Population genetic data underpin many studies of behavioral, ecological, and evolutionary processes in wild populations and contribute to effective conservation management. However, collecting genetic samples can be challenging when working with endangered, invasive, or cryptic species. Environmental DNA (eDNA) offers a way to sample genetic material non-invasively without requiring visual observation. While eDNA has been trialed extensively as a biodiversity and biosecurity monitoring tool with a strong taxonomic focus, it has yet to be fully explored as a means for obtaining population genetic information. Here, we review current research that employs eDNA approaches for the study of populations. We outline challenges facing eDNA-based population genetic methodologies, and suggest avenues of research for future developments. We advocate that with further optimizations, this emergent field holds great potential as part of the population genetics toolkit.
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页数:20
相关论文
共 210 条
[1]   Scrutinizing key steps for reliable metabarcoding of environmental samples [J].
Alberdi, Antton ;
Aizpurua, Ostaizka ;
Gilbert, M. Thomas P. ;
Bohmann, Kristine .
METHODS IN ECOLOGY AND EVOLUTION, 2018, 9 (01) :134-147
[2]   Genetics and the conservation of natural populations: allozymes to genomes [J].
Allendorf, Fred W. .
MOLECULAR ECOLOGY, 2017, 26 (02) :420-430
[3]   Real-time PCR designs to estimate nuclear and mitochondrial DNA copy number in forensic and ancient DNA studies [J].
Alonso, A ;
Martín, P ;
Albarrán, C ;
García, P ;
García, O ;
de Simón, LF ;
García-Hirschfeld, J ;
Sancho, M ;
de la Rúa, C ;
Fernández-Piqueras, J .
FORENSIC SCIENCE INTERNATIONAL, 2004, 139 (2-3) :141-149
[4]  
[Anonymous], 2015, MOL ECOL RESOUR, DOI DOI 10.1111/1755-0998.12338
[5]  
[Anonymous], SCI REPORTS
[6]  
[Anonymous], 2018, PRESS
[7]  
[Anonymous], BRIT ECOLOGICAL SOC
[8]   eDNA and specific primers for early detection of invasive species - A case study on the bivalve Rangia cuneata, currently spreading in Europe [J].
Ardura, Alba ;
Zaiko, Anastasija ;
Martinez, Jose L. ;
Samulioviene, Aurelija ;
Semenova, Anna ;
Garcia-Vazquez, Eva .
MARINE ENVIRONMENTAL RESEARCH, 2015, 112 :48-55
[9]   An environmental DNA sampling method for aye-ayes from their feeding traces [J].
Aylward, Megan L. ;
Sullivan, Alexis P. ;
Perry, George H. ;
Johnson, Steig E. ;
Louis, Edward E., Jr. .
ECOLOGY AND EVOLUTION, 2018, 8 (18) :9229-9240
[10]   Advances and applications of occupancymodels [J].
Bailey, Larissa L. ;
MacKenzie, Darryl I. ;
Nichols, James D. .
METHODS IN ECOLOGY AND EVOLUTION, 2014, 5 (12) :1269-1279