The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

被引:62
作者
Derks, Martijn F. L. [1 ,2 ]
Smit, Sandra [1 ]
Salis, Lucia [2 ,3 ]
Schijlen, Elio [4 ]
Bossers, Alex [5 ]
Mateman, Christa [2 ]
Pijl, Agata S. [2 ]
de Ridder, Dick [1 ]
Groenen, Martien A. M. [6 ]
Visser, Marcel E. [2 ,6 ]
Megens, Hendrik-Jan [6 ]
机构
[1] Wageningen Univ, Bioinformat Grp, NL-6700 AP Wageningen, Netherlands
[2] Netherlands Inst Ecol NIOO KNAW, Dept Anim Ecol, Wageningen, Netherlands
[3] Univ Groningen, Res Unit Chronobiol, Groningen, Netherlands
[4] Wageningen UR, PRI Biosci, Plant Res Int, Wageningen, Netherlands
[5] Wageningen UR, Cent Vet Inst, Dept Infect Biol, Lelystad, Netherlands
[6] Wageningen Univ, Anim Breeding & Genom Ctr, NL-6700 AP Wageningen, Netherlands
来源
GENOME BIOLOGY AND EVOLUTION | 2015年 / 7卷 / 08期
关键词
winter moth; Lepidoptera; cytochrome P450; sexual dimorphism; phenology; circadian clock; MAXIMUM-LIKELIHOOD PHYLOGENIES; DE-NOVO IDENTIFICATION; CIRCADIAN CLOCK GENES; LEPIDOPTERA-GEOMETRIDAE; MITOCHONDRIAL GENOME; WEB SERVER; SEQUENCE; EVOLUTION; SILKWORM; PROTEIN;
D O I
10.1093/gbe/evv145
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The winter moth (Operophtera brumata) belongs to one of the most species-rich families in Lepidoptera, the Geometridae (approximately 23,000 species). This family is of great economic importance as most species are herbivorous and capable of defoliating trees. Genome assembly of the winter moth allows the study of genes and gene families, such as the cytochrome P450 gene family, which is known to be vital in plant secondary metabolite detoxification and host-plant selection. It also enables exploration of the genomic basis for female brachyptery (wing reduction), a feature of sexual dimorphism in winter moth, and for seasonal timing, a trait extensively studied in this species. Here we present a reference genome for the winter moth, the first geometrid and largest sequenced Lepidopteran genome to date (638Mb) including a set of 16,912 predicted protein-coding genes. This allowed us to assess the dynamics of evolution on a genome-wide scale using the P450 gene family. We also identified an expanded gene family potentially linked to female brachyptery, and annotated the genes involved in the circadian clock mechanism as main candidates for involvement in seasonal timing. The genome will contribute to Lepidopteran genomic resources and comparative genomics. In addition, the genome enhances our ability to understand the genetic and molecular basis of insect seasonal timing and thereby provides a reference for future evolutionary and population studies on the winter moth.
引用
收藏
页码:2321 / 2332
页数:12
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