Automatic mining of symptom severity from psychiatric evaluation notes

被引:19
作者
Karystianis, George [1 ,6 ]
Nevado, Alejo J. [2 ]
Kim, Chi-Hun [2 ]
Dehghan, Azad [3 ,4 ]
Keane, John A. [4 ]
Nenadic, Goran [4 ,5 ]
机构
[1] Macquarie Univ, Australian Inst Hlth Innovat, Ctr Hlth Informat, Sydney, NSW, Australia
[2] Univ Oxford, Dept Psychiat, Oxford, England
[3] Christie NHS Fdn Trust, Manchester, Lancs, England
[4] Univ Manchester, Sch Comp Sci, Manchester, Lancs, England
[5] Hlth E Res Ctr, HerRC, Manchester, Lancs, England
[6] Univ New South Wales, Kirby Inst, Fac Med, Sydney, NSW, Australia
基金
英国工程与自然科学研究理事会;
关键词
classification; neural networks; psychiatric evaluation records; rule-based approach; text mining; ELECTRONIC MEDICAL-RECORDS; TEXT; INFORMATION; EXTRACTION;
D O I
10.1002/mpr.1602
中图分类号
R749 [精神病学];
学科分类号
100205 ;
摘要
ObjectivesAs electronic mental health records become more widely available, several approaches have been suggested to automatically extract information from free-text narrative aiming to support epidemiological research and clinical decision-making. In this paper, we explore extraction of explicit mentions of symptom severity from initial psychiatric evaluation records. We use the data provided by the 2016 CEGS N-GRID NLP shared task Track 2, which contains 541 records manually annotated for symptom severity according to the Research Domain Criteria. MethodsWe designed and implemented 3 automatic methods: a knowledge-driven approach relying on local lexicalized rules based on common syntactic patterns in text suggesting positive valence symptoms; a machine learning method using a neural network; and a hybrid approach combining the first 2 methods with a neural network. ResultsThe results on an unseen evaluation set of 216 psychiatric evaluation records showed a performance of 80.1% for the rule-based method, 73.3% for the machine-learning approach, and 72.0% for the hybrid one. ConclusionsAlthough more work is needed to improve the accuracy, the results are encouraging and indicate that automated text mining methods can be used to classify mental health symptom severity from free text psychiatric notes to support epidemiological and clinical research.
引用
收藏
页数:11
相关论文
共 25 条
[1]   Text mining applications in psychiatry: a systematic literature review [J].
Abbe, Adeline ;
Grouin, Cyril ;
Zweigenbaum, Pierre ;
Falissard, Bruno .
INTERNATIONAL JOURNAL OF METHODS IN PSYCHIATRIC RESEARCH, 2016, 25 (02) :86-100
[2]  
[Anonymous], 2016, P 2016 C EMP METH NA
[3]  
Baccianella S., 2009, 2009 9 INT C INT SYS
[4]   Getting More Out of Biomedical Documents with GATE's Full Lifecycle Open Source Text Analytics [J].
Cunningham, Hamish ;
Tablan, Valentin ;
Roberts, Angus ;
Bontcheva, Kalina .
PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (02)
[5]  
Dehghan A., 2013, SYST MAN CYB SMC 201
[6]   Recognition of medication information from discharge summaries using ensembles of classifiers [J].
Doan, Son ;
Collier, Nigel ;
Xu, Hua ;
Pham Hoang Duy ;
Tu Minh Phuong .
BMC MEDICAL INFORMATICS AND DECISION MAKING, 2012, 12
[7]   Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text [J].
Eriksson, Robert ;
Jensen, Peter Bjodstrup ;
Frankild, Sune ;
Jensen, Lars Juhl ;
Brunak, Soren .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2013, 20 (05) :947-953
[8]  
Filannino M., 2017, J BIOMEDICAL INFORM, V25
[9]   Extracting information from the text of electronic medical records to improve case detection: a systematic review [J].
Ford, Elizabeth ;
Carroll, John A. ;
Smith, Helen E. ;
Scott, Donia ;
Cassell, Jackie A. .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2016, 23 (05) :1007-1015
[10]   Automated encoding of clinical documents based on natural language processing [J].
Friedman, C ;
Shagina, L ;
Lussier, Y ;
Hripcsak, G .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2004, 11 (05) :392-402