Polycomb: a paradigm for genome organization from one to three dimensions

被引:32
作者
Delest, Anna [1 ]
Sexton, Tom [1 ]
Cavalli, Giacomo [1 ]
机构
[1] CNRS, Inst Human Genet, UPR 1142, 141 Rue Cardonille, F-34396 Montpellier 5, France
基金
欧洲研究理事会;
关键词
LONG NONCODING RNA; GROUP PROTEINS; HEMATOPOIETIC STEM; TARGET GENES; DEVELOPMENTAL REGULATORS; CHROMATIN CONFORMATION; DNA METHYLATION; BIVALENT GENES; PCG PROTEINS; HOX LOCI;
D O I
10.1016/j.ceb.2012.01.008
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Polycomb group proteins are important transcriptional repressors in developmental control, both stably silencing genes out of their appropriate lineage, and conferring dynamic regulation of genes whose expression changes in response to developmental cues. Polycomb is a key organizer of the linear epigenome, forming distinct chromatin domains of associated histone modifications, and fine-tuning the activities of genetic elements. Polycomb also modulates three-dimensional genome architecture by the formation of regulatory chromatin loops and coalescing target genes at discrete nuclear foci. Recent studies suggest that the linear epigenetic domains and chromosome architecture are intimately linked and the developmental plasticity of these scales of chromosome organization is beginning to be explored.
引用
收藏
页码:405 / 414
页数:10
相关论文
共 112 条
[1]   UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development [J].
Agger, Karl ;
Cloos, Paul A. C. ;
Christensen, Jesper ;
Pasini, Diego ;
Rose, Simon ;
Rappsilber, Juri ;
Issaeva, Irina ;
Canaani, Eli ;
Salcini, Anna Elisabetta ;
Helin, Kristian .
NATURE, 2007, 449 (7163) :731-U10
[2]   Long Noncoding RNA, Polycomb, and the Ghosts Haunting INK4b-ARF-INK4a Expression [J].
Aguilo, Francesca ;
Zhou, Ming-Ming ;
Walsh, Martin J. .
CANCER RESEARCH, 2011, 71 (16) :5365-5369
[3]   Virus infection induces NF-κB-dependent interchromosomal associations mediating monoallelic IFN-β gene expression [J].
Apostolou, Effie ;
Thanos, Dimitris .
CELL, 2008, 134 (01) :85-96
[4]   Genome-wide remodeling of the epigenetic landscape during myogenic differentiation [J].
Asp, Patrik ;
Blum, Roy ;
Vethantham, Vasupradha ;
Parisi, Fabio ;
Micsinai, Mariann ;
Cheng, Jemmie ;
Bowman, Christopher ;
Kluger, Yuval ;
Dynlacht, Brian David .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (22) :E149-E158
[5]   Chromatin signatures of pluripotent cell lines [J].
Azuara, V ;
Perry, P ;
Sauer, S ;
Spivakov, M ;
Jorgensen, HF ;
John, RM ;
Gouti, M ;
Casanova, M ;
Warnes, G ;
Merkenschlager, M ;
Fisher, AG .
NATURE CELL BIOLOGY, 2006, 8 (05) :532-U189
[6]   Inheritance of Polycomb-dependent chromosomal interactions in Drosophila [J].
Bantignies, F ;
Grimaud, C ;
Lavrov, S ;
Gabut, M ;
Cavalli, G .
GENES & DEVELOPMENT, 2003, 17 (19) :2406-2420
[7]   Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila [J].
Bantignies, Frederic ;
Roure, Virginie ;
Comet, Itys ;
Leblanc, Benjamin ;
Schuettengruber, Bernd ;
Bonnet, Jerome ;
Tixier, Vanessa ;
Mas, Andre ;
Cavalli, Giacomo .
CELL, 2011, 144 (02) :214-226
[8]   Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins [J].
Beisel, Christian ;
Buness, Andreas ;
Roustan-Espinosa, Ian M. ;
Koch, Britta ;
Schmitt, Sabine ;
Haas, Stefan A. ;
Hild, Marc ;
Katsuyama, Tomonori ;
Paro, Renato .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (42) :16615-16620
[9]   A bivalent chromatin structure marks key developmental genes in embryonic stem cells [J].
Bernstein, BE ;
Mikkelsen, TS ;
Xie, XH ;
Kamal, M ;
Huebert, DJ ;
Cuff, J ;
Fry, B ;
Meissner, A ;
Wernig, M ;
Plath, K ;
Jaenisch, R ;
Wagschal, A ;
Feil, R ;
Schreiber, SL ;
Lander, ES .
CELL, 2006, 125 (02) :315-326
[10]   The PRC1 Polycomb group complex interacts with PLZF/RARA to mediate leukemic transformation [J].
Boukarabila, Hanane ;
Saurin, Andrew J. ;
Batsche, Eric ;
Mossadegh, Noushine ;
van Lohuizen, Maarten ;
Otte, Arie P. ;
Pradel, Jacques ;
Muchardt, Christian ;
Sieweke, Michael ;
Duprez, Estelle .
GENES & DEVELOPMENT, 2009, 23 (10) :1195-1206