Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts than Direct Coupling Analysis

被引:0
|
作者
Zhou, Tian-Ming [1 ,2 ]
Wang, Sheng [3 ]
Xu, Jinbo [1 ]
机构
[1] Toyota Technol Inst, Chicago, IL 60637 USA
[2] Tsinghua Univ, Inst Interdisciplinary Informat Sci, ITCS, Beijing, Peoples R China
[3] KAUST, CBRC, Thuwal, Saudi Arabia
关键词
D O I
暂无
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:295 / 296
页数:2
相关论文
共 24 条
  • [1] Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes
    Yan, Yumeng
    Huang, Sheng-You
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (05)
  • [2] Predicting protein residue-residue contacts using deep networks and boosting
    Eickholt, Jesse
    Cheng, Jianlin
    BIOINFORMATICS, 2012, 28 (23) : 3066 - 3072
  • [3] Predicting protein residue-residue contacts using random forests and deep networks
    Joseph Luttrell
    Tong Liu
    Chaoyang Zhang
    Zheng Wang
    BMC Bioinformatics, 20
  • [4] Estimation of Residue-Residue Coevolution using Direct Coupling Analysis Identifies Many Native Contacts Across a Large Number of Domain Families
    Morcos, Faruck
    Pagnini, Andrea
    Lunt, Bryan
    Bertolino, Arianna
    Marks, Debora
    Sander, Chris
    Zecchina, Riccardo
    Onuchic, Jose N.
    Hwa, Terence
    Weigt, Martin
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 250A - 250A
  • [5] Predicting protein residue-residue contacts using random forests and deep networks
    Luttrell, Joseph
    Liu, Tong
    Zhang, Chaoyang
    Wang, Zheng
    BMC BIOINFORMATICS, 2019, 20 (Suppl 2)
  • [6] Deep graph learning of inter-protein contacts
    Xie, Ziwei
    Xu, Jinbo
    BIOINFORMATICS, 2022, 38 (04) : 947 - 953
  • [7] Improved protein residue-residue contacts prediction using learning-to-rank
    Jing, Xiaoyang
    Dong, Qiwen
    2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2016, : 116 - 121
  • [8] Non-local residue-residue contacts in proteins are more conserved than local ones
    Noivirt-Brik, Orly
    Hazan, Gershon
    Unger, Ron
    Ofran, Yanay
    BIOINFORMATICS, 2013, 29 (03) : 331 - 337
  • [9] Direct-coupling analysis of residue coevolution captures native contacts across many protein families
    Morcos, Faruck
    Pagnani, Andrea
    Lunt, Bryan
    Bertolino, Arianna
    Marks, Debora S.
    Sander, Chris
    Zecchina, Riccardo
    Onuchic, Jose N.
    Hwa, Terence
    Weigt, Martin
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (49) : E1293 - E1301
  • [10] Prediction of residue-residue contact matrix for protein-protein interaction with Fisher score features and deep learning
    Du, Tianchuan
    Liao, Li
    Wu, Cathy H.
    Sun, Bilin
    METHODS, 2016, 110 : 97 - 105