Detection of Zaire Ebola virus by real-time reverse transcription-polymerase chain reaction, Sierra Leone, 2014

被引:14
作者
Liu, Licheng [1 ]
Sun, Yang [2 ]
Kargbo, Brima [3 ]
Zhang, Chuntao [4 ]
Feng, Huahua [5 ]
Lu, Huijun [2 ]
Liu, Wenseng [2 ]
Wang, Chengyu [2 ]
Hu, Yi [2 ]
Deng, Yongqiang [2 ]
Jiang, Jiafu [2 ]
Kang, Xiaoping [1 ]
Yang, Honglei [5 ]
Jiang, Yongqiang [1 ]
Yang, Yinhui [1 ]
Kargbo, David [3 ]
Qian, Jun [2 ]
Chen, Weijun [5 ,6 ]
机构
[1] Acad Mil Med Sci, Inst Microbiol & Epidemiol, State Key Lab Pathogen & Biosecur, Beijing 100071, Peoples R China
[2] China Mobile Lab Testing Team Sierra Leone, Freetown, Sierra Leone
[3] Minist Hlth & Sanitat, Freetown, Sierra Leone
[4] Natl Inst Food & Drug Control, Beijing 100050, Peoples R China
[5] Beijing BGI GBI Biotech Co Ltd, Beijing 101300, Peoples R China
[6] Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China
关键词
Ebola virus disease; Zaire Ebola virus; Real-time reverse transcription polymerase; chain reaction (rRT-PCR); RAPID DETECTION; HEMORRHAGIC-FEVER; DENGUE VIRUS; PCR; FILOVIRUSES; OUTBREAK; PROVINCE; CHINA;
D O I
10.1016/j.jviromet.2015.05.005
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
During the 2014 Ebola virus disease (EVD) outbreak, a real-time quantitative polymerase chain reaction was established to detect and identify the Zaire Ebola virus. We describe the use of this assay to screen 315 clinical samples from EVD suspected person in Sierra Leone. The detection rate in blood samples was 77.81% (207/266), and there were relatively higher detection rate (79.32% and 81.42%, respectively) during the first two weeks after onset of symptoms. In the two weeks that followed, the detection rate declined to 66.67% and 25.00%, respectively. There was the highest virus load at the first week and then decreased. The detection rate in swab samples was 89.79% (44/49). This may be benefit from the included patients. 46 of 49 swab samples were collected from died patients. Taken together, the results presented here indicate that the assay specifically and sensitively detects Zaire Ebola virus. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:62 / 65
页数:4
相关论文
共 13 条
  • [1] [Anonymous], 2014, EB RESP ROADM SIT RE
  • [2] Real-time PCR for detecting circulating dengue virus in the Guangdong Province of China in 2006
    Bai, Zhijun
    Liu, Licheng
    Tu, Zeng
    Yao, Lisi
    Liu, Jianwei
    Xu, Bing
    Tang, Boheng
    Liu, Jinhua
    Wan, Yongji
    Fang, Meiyu
    Chen, Weijun
    [J]. JOURNAL OF MEDICAL MICROBIOLOGY, 2008, 57 (12) : 1547 - 1552
  • [3] Emergence of Zaire Ebola Virus Disease in Guinea
    Baize, Sylvain
    Pannetier, Delphine
    Oestereich, Lisa
    Rieger, Toni
    Koivogui, Lamine
    Magassouba, N'Faly
    Soropogui, Barre
    Sow, Mamadou Saliou
    Keita, Sakoba
    De Clerck, Hilde
    Tiffany, Amanda
    Dominguez, Gemma
    Loua, Mathieu
    Traore, Alexis
    Kolie, Moussa
    Malano, Emmanuel Roland
    Heleze, Emmanuel
    Bocquin, Anne
    Mely, Stephane
    Raoul, Herve
    Caro, Valerie
    Cadar, Daniel
    Gabriel, Martin
    Pahlmann, Meike
    Tappe, Dennis
    Schmidt-Chanasit, Jonas
    Impouma, Benido
    Diallo, Abdoul Karim
    Formenty, Pierre
    Van Herp, Michel
    Guenther, Stephan
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2014, 371 (15) : 1418 - 1425
  • [4] Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorrhagic fever virus, Rift Valley fever virus, Dengue virus, and Yellow fever virus by real-time reverse transcription-PCR
    Drosten, C
    Göttig, S
    Schilling, S
    Asper, M
    Panning, M
    Schmitz, H
    Günther, S
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2002, 40 (07) : 2323 - 2330
  • [5] Fajfr M, 2014, EPIDEMIOL MIKROBI IM, V63, P238
  • [6] Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
    Gire, Stephen K.
    Goba, Augustine
    Andersen, Kristian G.
    Sealfon, Rachel S. G.
    Park, Daniel J.
    Kanneh, Lansana
    Jalloh, Simbirie
    Momoh, Mambu
    Fullah, Mohamed
    Dudas, Gytis
    Wohl, Shirlee
    Moses, Lina M.
    Yozwiak, Nathan L.
    Winnicki, Sarah
    Matranga, Christian B.
    Malboeuf, Christine M.
    Qu, James
    Gladden, Adrianne D.
    Schaffner, Stephen F.
    Yang, Xiao
    Jiang, Pan-Pan
    Nekoui, Mahan
    Colubri, Andres
    Coomber, Moinya Ruth
    Fonnie, Mbalu
    Moigboi, Alex
    Gbakie, Michael
    Kamara, Fatima K.
    Tucker, Veronica
    Konuwa, Edwin
    Saffa, Sidiki
    Sellu, Josephine
    Jalloh, Abdul Azziz
    Kovoma, Alice
    Koninga, James
    Mustapha, Ibrahim
    Kargbo, Kandeh
    Foday, Momoh
    Yillah, Mohamed
    Kanneh, Franklyn
    Robert, Willie
    Massally, James L. B.
    Chapman, Sinead B.
    Bochicchio, James
    Murphy, Cheryl
    Nusbaum, Chad
    Young, Sarah
    Birren, BruceW.
    Grant, Donald S.
    Scheiffelin, John S.
    [J]. SCIENCE, 2014, 345 (6202) : 1369 - 1372
  • [7] Detection of a novel bunyavirus associated with fever, thrombocytopenia and leukopenia syndrome in Henan Province, China, using real-time reverse transcription PCR
    Huang, Xueyong
    Liu, Licheng
    Du, Yanhua
    Ma, Hongxia
    Mu, Yujiao
    Wang, Pengzhi
    Ma, Hong
    Tang, Xiaoyan
    Wang, Haifeng
    Kang, Kai
    Zhang, Shiqiang
    Wu, Weili
    Chen, Haomin
    Liu, Guohua
    Yang, Yinhui
    Jian, Yongqiangj
    Xu, Bianli
    Chen, Weijun
    [J]. JOURNAL OF MEDICAL MICROBIOLOGY, 2013, 62 : 1060 - 1064
  • [8] Huang Yi, 2012, Virologica Sinica, V27, P273, DOI 10.1007/s12250-012-3252-y
  • [9] EVALUATION OF PERCEIVED THREAT DIFFERENCES POSED BY FILOVIRUS VARIANTS
    Kuhn, Jens H.
    Dodd, Lori E.
    Wahl-Jensen, Victoria
    Radoshitzky, Sheli R.
    Bavari, Sina
    Jahrling, Peter B.
    [J]. BIOSECURITY AND BIOTERRORISM-BIODEFENSE STRATEGY PRACTICE AND SCIENCE, 2011, 9 (04) : 361 - 371
  • [10] Proposal for a revised taxonomy of the family Filoviridae: classification, names of taxa and viruses, and virus abbreviations
    Kuhn, Jens H.
    Becker, Stephan
    Ebihara, Hideki
    Geisbert, Thomas W.
    Johnson, Karl M.
    Kawaoka, Yoshihiro
    Lipkin, W. Ian
    Negredo, Ana I.
    Netesov, Sergey V.
    Nichol, Stuart T.
    Palacios, Gustavo
    Peters, Clarence J.
    Tenorio, Antonio
    Volchkov, Viktor E.
    Jahrling, Peter B.
    [J]. ARCHIVES OF VIROLOGY, 2010, 155 (12) : 2083 - 2103