Exome sequencing is a useful diagnostic tool for complicated forms of hereditary spastic paraplegia

被引:23
作者
Bettencourt, C. [1 ,2 ,3 ]
Lopez-Sendon, J. L. [4 ]
Garcia-Caldentey, J. [4 ]
Rizzu, P. [5 ]
Bakker, I. M. C. [5 ]
Shomroni, O. [5 ]
Quintans, B. [6 ,7 ]
Davila, J. R. [8 ]
Bevova, M. R. [5 ]
Sobrido, M-J [6 ,7 ]
Heutink, P. [5 ]
de Yebenes, J. G. [4 ]
机构
[1] Univ Porto, Inst Mol & Cell Biol IBMC, P-4100 Oporto, Portugal
[2] Univ Azores, Ctr Res Nat Resources CIRN, P-9501801 Ponta Delgada, Azores, Portugal
[3] Univ Azores, Dept Biol, P-9501801 Ponta Delgada, Azores, Portugal
[4] Hosp Ramon & Cajal, Dept Neurol, E-28034 Madrid, Spain
[5] Vrije Univ Amsterdam Med Ctr, Dept Clin Genet, Sect Med Genom, Amsterdam, Netherlands
[6] Clin Hosp Santiago de Compostela SERGAS, Fdn Publ Galega Med Xenom, Santiago De Compostela, Spain
[7] Clin Hosp Santiago de Compostela SERGAS, Hlth Res Inst Santiago de Compostela IDIS, Santiago De Compostela, Spain
[8] Univ Complutense Madrid, Fac Med, Dept Bioquim & Biol Mol 3, Madrid, Spain
关键词
genetic heterogeneity; molecular diagnosis; next-generation sequencing; spastic paraplegia; SPG11; whole-exome sequencing; SPG11; MUTATIONS; SPATACSIN; PHENOTYPE;
D O I
10.1111/cge.12133
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Hereditary spastic paraplegias constitute a heterogeneous group of neurodegenerative diseases encompassing pure and complicated forms, for which at least 52 loci and 31 causative genes have been identified. Although mutations in the SPAST gene explain approximately 40% of the pure autosomal dominant forms, molecular diagnosis can be challenging for the sporadic and recessive forms, which are often complicated and clinically overlap with a broad number of movement disorders. The validity of exome sequencing as a routine diagnostic approach in the movement disorder clinic needs to be assessed. The main goal of this study was to explore the usefulness of an exome analysis for the diagnosis of a complicated form of spastic paraplegia. Whole-exome sequencing was performed in two Spanish siblings with a neurodegenerative syndrome including upper and lower motor neuron, ocular and cerebellar signs. Exome sequencing revealed that both patients carry a novel homozygous nonsense mutation in exon 15 of the SPG11 gene (c.2678G>A; p.W893X), which was not found in 584 Spanish control chromosomes. After many years of follow-up and multiple time-consuming genetic testing, we were able to diagnose these patients by making use of whole-exome sequencing, showing that this is a cost-efficient diagnostic tool for the movement disorder specialist.
引用
收藏
页码:154 / 158
页数:5
相关论文
共 22 条
[1]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[2]   Expanding the clinical spectrum of SPG11 gene mutations in recessive hereditary spastic paraplegia with thin corpus callosum [J].
Aleem, Alice Abdel ;
Abu-Shahba, Nourhan ;
Swistun, Dominika ;
Silhavy, Jennifer ;
Bielas, Stephanie L. ;
Sattar, Shifteh ;
Gleeson, Joseph G. ;
Zaki, Maha S. .
EUROPEAN JOURNAL OF MEDICAL GENETICS, 2011, 54 (01) :82-85
[3]   Revisiting genotype-phenotype overlap in neurogenetics: Triplet-repeat expansions mimicking spastic paraplegias [J].
Bettencourt, Conceicao ;
Quintans, Beatriz ;
Ros, Raquel ;
Ampuero, Israel ;
Yanez, Zuleima ;
Ignacio Pascual, Samuel ;
Garcia de Yebenes, Justo ;
Sobrido, Maria-Jesus .
HUMAN MUTATION, 2012, 33 (09) :1315-1323
[4]   Screening of ARHSP-TCC Patients Expands the Spectrum of SPG11 Mutations and Includes a Large Scale Gene Deletion [J].
Denora, Paola S. ;
Schlesinger, David ;
Casali, Carlo ;
Kok, Fernando ;
Tessa, Alessandra ;
Boukhris, Amir ;
Azzedine, Hamid ;
Dotti, Maria Teresa ;
Bruno, Claudio ;
Truchetto, Jeremy ;
Biancheri, Roberta ;
Fedirko, Estelle ;
Di Rocco, Maja ;
Bueno, Clarissa ;
Malandrini, Alessandro ;
Battini, Roberta ;
Sickl, Elisabeth ;
de Leva, Maria Fulvia ;
Boespflug-Tanguy, Odile ;
Silvestri, Gabriella ;
Simonati, Alessandro ;
Said, Edith ;
Ferbert, Andreas ;
Criscuolo, Chiara ;
Heinimann, Karl ;
Modoni, Anna ;
Weber, Peter ;
Palmeri, Silvia ;
Plasilova, Martina ;
Pauri, Flavia ;
Cassandrini, Denise ;
Battisti, Carla ;
Pini, Antonella ;
Tosetti, Michela ;
Hauser, Erwin ;
Masciullo, Marcella ;
Di Fabio, Roberto ;
Piccolo, Francesca ;
Denis, Elodie ;
Cioni, Giovanni ;
Massa, Roberto ;
Della Giustina, Elvio ;
Calabrese, Olga ;
Melone, Marina A. B. ;
De Michele, Giuseppe ;
Federico, Antonio ;
Bertini, Enrico ;
Durr, Alexandra ;
Brockmann, Knut ;
van der Knaap, Marjo S. .
HUMAN MUTATION, 2009, 30 (03) :E500-E519
[5]   Hereditary spastic paraplegias: an update [J].
Depienne, Christel ;
Stevanin, Giovanni ;
Brice, Alexis ;
Durr, Alexandra .
CURRENT OPINION IN NEUROLOGY, 2007, 20 (06) :674-680
[6]   Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis [J].
Erlich, Yaniv ;
Edvardson, Simon ;
Hodges, Emily ;
Zenvirt, Shamir ;
Thekkat, Pramod ;
Shaag, Avraham ;
Dor, Talya ;
Hannon, Gregory J. ;
Elpeleg, Orly .
GENOME RESEARCH, 2011, 21 (05) :658-664
[7]   Hereditary spastic paraplegias with autosomal dominant, recessive, X-linked, or maternal trait of inheritance [J].
Finsterer, Josef ;
Loescher, Wolfgang ;
Quasthoff, Stefan ;
Wanschitz, Julia ;
Auer-Grumbach, Michaela ;
Stevanin, Giovanni .
JOURNAL OF THE NEUROLOGICAL SCIENCES, 2012, 318 (1-2) :1-18
[8]   VarScan: variant detection in massively parallel sequencing of individual and pooled samples [J].
Koboldt, Daniel C. ;
Chen, Ken ;
Wylie, Todd ;
Larson, David E. ;
McLellan, Michael D. ;
Mardis, Elaine R. ;
Weinstock, George M. ;
Wilson, Richard K. ;
Ding, Li .
BIOINFORMATICS, 2009, 25 (17) :2283-2285
[9]   Revisiting Mendelian disorders through exome sequencing [J].
Ku, Chee-Seng ;
Naidoo, Nasheen ;
Pawitan, Yudi .
HUMAN GENETICS, 2011, 129 (04) :351-370
[10]   Fast and accurate short read alignment with Burrows-Wheeler transform [J].
Li, Heng ;
Durbin, Richard .
BIOINFORMATICS, 2009, 25 (14) :1754-1760