Theoretical modeling of the hydrated serotonin in solution: Insight into intermolecular hydrogen bonding dynamics and spectral shift in the electronic excited states

被引:16
作者
Zhang, Mingxing [1 ]
Guo, Yurong [1 ]
Feng, Xia [1 ]
Yu, Xi [1 ]
Jin, Xiaoning [1 ]
Qiu, Lijuan [1 ]
Zhao, Guangjiu [1 ]
机构
[1] Tianjin Univ, Natl Virtual Simulat Expt Teaching Ctr Chem & Che, Natl Demonstrat Ctr Expt Chem & Chem Engn Educ, Dept Chem,Sch Sci,Tianjin Key Lab Mol Optoelect S, Tianjin 300354, Peoples R China
基金
中国国家自然科学基金;
关键词
Hydrogen bonding; Serotonin; Excited state; DFT; TDDFT; DENSITY-FUNCTIONAL METHODS; PROTON-TRANSFER; CONFORMATIONAL PREFERENCES; PROTEIN DYNAMICS; GAS-PHASE; FLUORESCENCE; TRANSITION; BIOMOLECULES; SOLVATION; SOLVENTS;
D O I
10.1016/j.molliq.2019.111093
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this work, the intermolecular hydrogen bonding interaction in both the ground state and electronic excited states of the hydrogen bonded compounds Serotonin-(H2O)(n) n = 1,2 were investigated by the density functional theory (DFT) and the time-dependent density functional theory (TDDFT) method. By monitoring the structures in different electronic states, it has been demonstrated that the hydrogen bonds in Serotonin-(H2O)(n) n = 1, 2 are strengthened upon excitation. And the hydrogen bond site of 5-OH of the ring is always strengthened, more significantly. The simulated infrared (IR) spectrum demonstrated that the red-shifts of the stretching vibration frequencies of hydrogen bonded OH groups were consistent with the change trend of hydrogen bonds. Furthermore, the interaction among the hydrogen bonds caused by the bridged-water structure should be considered while making analysis of the calculated results such as the structure information and the IR spectrum. (C) 2019 Elsevier B.V. All rights reserved.
引用
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页数:7
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共 60 条
[1]   Kinetics of acid-induced spectral changes in the GFPmut2 chromophore [J].
Abbruzzetti, S ;
Grandi, E ;
Viappiani, C ;
Bologna, S ;
Campanini, B ;
Raboni, S ;
Bettati, S ;
Mozzarelli, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (02) :626-635
[2]   Amination of pyridylketenes: Experimental and computational studies of strong amide enol stabilization by the 2-pyridyl group [J].
Acton, AW ;
Allen, AD ;
Antunes, LM ;
Fedorov, AV ;
Najafian, K ;
Tidwell, TT ;
Wagner, BD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (46) :13790-13794
[3]   Transmembrane signaling in the brain by serotonin, a key regulator of physiology and emotion [J].
Adayev, T ;
Ranasinghe, B ;
Banerjee, P .
BIOSCIENCE REPORTS, 2005, 25 (5-6) :363-385
[4]   How enzyme dynamics helps catalyze a reaction in atomic detail: A transition path sampling study [J].
Basner, JE ;
Schwartz, SD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (40) :13822-13831
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[6]   EXCITED-STATE HYDROGEN-BONDING OF THE 2-NAPHTHOL-TRIETHYLAMINE SYSTEM IN 1,4-DIOXANE [J].
BISHT, PB ;
JOSHI, GC ;
TRIPATHI, HB .
CHEMICAL PHYSICS LETTERS, 1995, 237 (3-4) :356-360
[7]   The infrared and ultraviolet spectra of individual conformational isomers of biomolecules: Tryptamine [J].
Carney, JR ;
Zwier, TS .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (38) :8677-8688
[8]   Reconsideration of the excited-state double proton transfer (ESDPT) in 2-aminopyridine/acid systems: role of the intermolecular hydrogen bonding in excited states [J].
Chai, Shuo ;
Zhao, Guang-Jiu ;
Song, Peng ;
Yang, Song-Qiu ;
Liu, Jian-Yong ;
Han, Ke-Li .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2009, 11 (21) :4385-4390
[9]   Ultrafast solvation dynamics explored by femtosecond photon echo spectroscopies [J].
de Boeij, WP ;
Pshenichnikov, MS ;
Wiersma, DA .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 1998, 49 :99-123
[10]   Theoretical study of the hydrogen-bonded complexes serotonin-water/hydrogen peroxide [J].
Delchev, VB ;
Mikosch, H .
JOURNAL OF MOLECULAR MODELING, 2006, 12 (03) :272-280