Biodiversity into your hands - A call for a virtual global natural history 'metacollection'

被引:31
作者
Balke, Michael [1 ,2 ]
Schmidt, Stefan [1 ]
Hausmann, Axel [1 ]
Toussaint, Emmanuel F. A. [1 ,2 ]
Bergsten, Johannes [3 ]
Buffington, Matthew [4 ]
Haeuser, Christoph L. [5 ]
Kroupa, Alexander [5 ]
Hagedorn, Gregor [5 ]
Riedel, Alexander [6 ]
Polaszek, Andrew [7 ]
Ubaidillah, Rosichon [8 ]
Krogmann, Lars [9 ]
Zwick, Andreas [9 ]
Fikacek, Martin [10 ]
Hajek, Jiri [10 ]
Michat, Mariano C. [11 ]
Dietrich, Christopher [12 ]
La Salle, John [13 ]
Mantle, Beth [14 ]
Ng, Peter K. L. [15 ,16 ]
Hobern, Donald [17 ]
机构
[1] Zool Staatssammlung, D-81247 Munich, Germany
[2] Univ Munich, GeoBio Ctr, Munich, Germany
[3] Swedish Museum Nat Hist, SE-10405 Stockholm, Sweden
[4] Smithsonian Inst, Systemat Entomol Lab, USDA ARS, NMNH, Washington, DC 20560 USA
[5] Museum Nat Kunde, D-10115 Berlin, Germany
[6] Staatliches Museum Nat Kunde Karlsruhe, D-76133 Karlsruhe, Germany
[7] Nat Hist Museum, London SW7 5BD, England
[8] Museum Zool Bogoriense, LIPI Div Zool, Cibinong, West Java, Indonesia
[9] Staatliches Museum Nat Kunde Stuttgart, D-70191 Stuttgart, Germany
[10] Natl Museum, Dept Entomol, Prague 14800 4, Czech Republic
[11] Univ Buenos Aires, Dept Biodiversidad & Biol Expt, CONICET, Entomol Lab, Buenos Aires, DF, Argentina
[12] Univ Illinois, Illinois Nat Hist Survey, Champaign, IL 61801 USA
[13] CSIRO Ecosyst Sci, Atlas Living Australia, Canberra, ACT 2601, Australia
[14] CSIRO Ecosyst Sci, Australian Natl Insect Collect, Canberra, ACT 2601, Australia
[15] Natl Univ Singapore, Singapore 117543, Singapore
[16] Natl Univ Singapore, Dept Biol Sci, Raffles Museum Biodivers Res, Singapore 117543, Singapore
[17] GBIF Secretariat, DK-2100 Copenhagen, Denmark
基金
美国国家科学基金会;
关键词
Mass digitization; Natural history collections; Collection access; Metacollection; Cybertaxonomy; Online resources; Robotic imaging; Accessions; DNA extraction vouchers; DIGITIZATION; COLLECTIONS; TAXONOMY;
D O I
10.1186/1742-9994-10-55
中图分类号
Q95 [动物学];
学科分类号
071002 ;
摘要
Background: Many scientific disciplines rely on correct taxon delineations and identifications. So does a great part of the general public as well as decision makers. Researchers, students and enthusiastic amateurs often feel frustrated because information about species remains scattered, difficult to access, or difficult to decipher. Together, this affects almost anyone who wishes to identify species or verify identifications. Many remedies have been proposed, but we argue that the role of natural history collections remains insufficiently appreciated. We suggest using state-of-the-art mass imaging technology and to join forces to create a global natural history metacollection on the internet, providing access to the morphology of tens of millions of specimens and making them available for automated digital image analysis. Discussion: Robotic high-resolution imaging technology and fast (high performance) computer-based image stitching make it now feasible to digitize entire collection drawers typically used for arthropod collections, or trays or containers used for other objects. Resolutions of 500 megapixels and much higher are already utilized to capture the contents of 40x50 cm collection drawers, providing amazing detail of specimens. Flanked by metadata entry, this helps to create access to tens of thousands of specimens in days. By setting priorities and combining the holdings of the most comprehensive collections for certain taxa, drawer digitizing offers the unique opportunity to create a global, virtual metacollection. The taxonomic and geographic coverage of such a collection could never be achieved by a single institution or individual. We argue that by joining forces, many new impulses will emerge for systematic biology, related fields and understanding of biodiversity in general. Digitizing drawers containing unidentified, little-curated specimens is a contribution towards the beginning of a new era of online curation. It also will help taxonomists and curators to discover and process the millions of "gems" of undescribed species hidden in museum accessions. Summary: Our proposal suggests creating virtual, high-resolution image resources that will, for the first time in history, provide access for expert scientists as well as students and the general public to the enormous wealth of the world's natural history collections. We foresee that this will contribute to a better understanding, appreciation and increased use of biodiversity resources and the natural history collections serving this cause.
引用
收藏
页数:9
相关论文
共 23 条
[1]   A plea for digital reference collections and other science-based digitization initiatives in taxonomy: Sepsidnet as exemplar [J].
Ang, Yuchen ;
Puniamoorthy, Jayanthi ;
Pont, Adrian C. ;
Bartak, Miroslav ;
Blanckenhorn, Wolf U. ;
Eberhard, William G. ;
Puniamoorthy, Nalini ;
Silva, Vera C. ;
Munari, Lorenzo ;
Meier, Rudolf .
SYSTEMATIC ENTOMOLOGY, 2013, 38 (03) :637-644
[2]  
[Anonymous], IMAGEJ
[3]  
Arbuckle T., 2001, Biodiversity informatics in action: identification and monitoring of bee species using ABIS, P425
[4]   The US Virtual Herbarium: working with individual herbaria to build a national resource [J].
Barkworth, Mary E. ;
Murrell, Zack E. .
ZOOKEYS, 2012, (209) :55-73
[5]   Results and insights from the NCSU Insect Museum GigaPan project [J].
Bertone, Matthew A. ;
Blinn, Robert L. ;
Stanfield, Tanner M. ;
Dew, Kelly J. ;
Seltmann, Katja C. ;
Deans, Andrew R. .
ZOOKEYS, 2012, (209) :115-132
[6]   No specimen left behind: industrial scale digitization of natural history collections [J].
Blagoderov, Vladimir ;
Kitching, Ian J. ;
Livermore, Laurence ;
Simonsen, Thomas J. ;
Smith, Vincent S. .
ZOOKEYS, 2012, (209) :133-146
[7]   InvertNet: a new paradigm for digital access to invertebrate collections [J].
Dietrich, Chris ;
Hart, John ;
Raila, David ;
Ravaioli, Umberto ;
Sobh, Nahil ;
Sobh, Omar ;
Taylor, Chris .
ZOOKEYS, 2012, (209) :165-181
[8]   Image based Digitisation of Entomology Collections: Leveraging volunteers to increase digitization capacity [J].
Flemons, Paul ;
Berents, Penny .
ZOOKEYS, 2012, (209) :203-217
[9]   Challenges for taxonomy - The discipline will have to reinvent itself if it is to survive and flourish. [J].
Godfray, HCJ .
NATURE, 2002, 417 (6884) :17-19
[10]   Barcoding animal life:: cytochrome c oxidase subunit 1 divergences among closely related species [J].
Hebert, PDN ;
Ratnasingham, S ;
deWaard, JR .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2003, 270 :S96-S99