The RNA binding domain of ribosomal protein L11 is structurally similar to homeodomains

被引:63
作者
Xing, YY [1 ]
GuhaThakurta, D [1 ]
Draper, DE [1 ]
机构
[1] JOHNS HOPKINS UNIV,DEPT CHEM,BALTIMORE,MD 21218
关键词
D O I
10.1038/nsb0197-24
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The RNA binding domain of ribosomal protein L11 is strikingly similar to the homeodomain class of eukaryotic DNA binding proteins: it contains three alpha-helices that superimpose with homeodomain alpha-helices, and some conserved residues required for rRNA recognition align with homeodomain helix III residues contacting DNA bases.
引用
收藏
页码:24 / 27
页数:4
相关论文
共 31 条
[1]   alpha helix-RNA major groove recognition in an HIV-1 Rev peptide RRE RNA complex [J].
Battiste, JL ;
Mao, HY ;
Rao, NS ;
Tan, RY ;
Muhandiram, DR ;
Kay, LE ;
Frankel, AD ;
Williamson, JR .
SCIENCE, 1996, 273 (5281) :1547-1551
[2]   THE WINGED-HELIX DNA-BINDING MOTIF - ANOTHER HELIX-TURN-HELIX TAKEOFF [J].
BRENNAN, RG .
CELL, 1993, 74 (05) :773-776
[3]   CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE-H5 [J].
CLARK, KL ;
HALAY, ED ;
LAI, ES ;
BURLEY, SK .
NATURE, 1993, 364 (6436) :412-420
[4]   RNA recognition and translational regulation by a homeodomain protein [J].
Dubnau, J ;
Struhl, G .
NATURE, 1996, 379 (6567) :694-699
[5]   CHARACTERIZATION OF THE BINDING-SITES OF PROTEIN-L11 AND THE L10.(L12)4 PENTAMERIC COMPLEX IN THE GTPASE DOMAIN OF 23S RIBOSOMAL-RNA FROM ESCHERICHIA-COLI [J].
EGEBJERG, J ;
DOUTHWAITE, SR ;
LILJAS, A ;
GARRETT, RA .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 213 (02) :275-288
[6]   A COMPILATION OF LARGE SUBUNIT (23S-LIKE AND 23S-LIKE) RIBOSOMAL-RNA STRUCTURES [J].
GUTELL, RR ;
SCHNARE, MN ;
GRAY, MW .
NUCLEIC ACIDS RESEARCH, 1992, 20 :2095-2109
[7]   CRYSTAL-STRUCTURE OF THE DNA-BINDING DOMAIN OF THE HEAT-SHOCK TRANSCRIPTION FACTOR [J].
HARRISON, CJ ;
BOHM, AA ;
NELSON, HCM .
SCIENCE, 1994, 263 (5144) :224-227
[8]   Structure of the even-skipped homeodomain complexed to AT-rich DNA: New perspectives on homeodomain specificity [J].
Hirsch, JA ;
Aggarwal, AK .
EMBO JOURNAL, 1995, 14 (24) :6280-6291
[9]   PROTEIN-STRUCTURE COMPARISON BY ALIGNMENT OF DISTANCE MATRICES [J].
HOLM, L ;
SANDER, C .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 233 (01) :123-138
[10]   Solution structure of prokaryotic ribosomal protein S17 by high-resolution NMR spectroscopy [J].
Jaishree, TN ;
Ramakrishnan, V ;
White, SW .
BIOCHEMISTRY, 1996, 35 (09) :2845-2853