Towards Bayesian experimental design for nonlinear models that require a large number of sampling times

被引:37
作者
Ryan, Elizabeth G. [1 ]
Drovandi, Christopher C. [1 ]
Thompson, M. Helen [1 ]
Pettitt, Anthony N. [1 ]
机构
[1] Queensland Univ Technol, Brisbane, Qld 4001, Australia
关键词
Bayesian optimal design; Sampling strategies; Robust design; Markov chain Monte Carlo; Stochastic optimisation; SEQUENTIAL MONTE-CARLO; PARAMETER UNCERTAINTY; ROBUST;
D O I
10.1016/j.csda.2013.08.017
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The use of Bayesian methodologies for solving optimal experimental design problems has increased. Many of these methods have been found to be computationally intensive for design problems that require a large number of design points. A simulation-based approach that can be used to solve optimal design problems in which one is interested in finding a large number of (near) optimal design points for a small number of design variables is presented. The approach involves the use of lower dimensional parameterisations that consist of a few design variables, which generate multiple design points. Using this approach, one simply has to search over a few design variables, rather than searching over a large number of optimal design points, thus providing substantial computational savings. The methodologies are demonstrated on four applications, including the selection of sampling times for pharmacokinetic and heat transfer studies, and involve nonlinear models. Several Bayesian design criteria are also compared and contrasted, as well as several different lower dimensional parameterisation schemes for generating the many design points. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:45 / 60
页数:16
相关论文
共 40 条
[1]   Bayesian-optimal design via interacting particle systems [J].
Amzal, Billy ;
Bois, Frederic Y. ;
Parent, Eric ;
Robert, Christian R. .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2006, 101 (474) :773-785
[2]  
[Anonymous], TECHNICAL REPORT
[3]  
Atkinson AC, 1992, OPTIMUM EXPT DESIGNS, DOI [10.1007/978-3-642-04898-2_434, DOI 10.1007/978-3-642-04898-2_434]
[4]  
Bernado J.M., 1994, BAYESIAN THEORY
[5]  
Berry, 2006, DECIS ANAL, V3, P197, DOI DOI 10.1287/DECA.1060.0079
[6]   Decision analysis by augmented probability simulation [J].
Bielza, C ;
Müller, P ;
Insua, DR .
MANAGEMENT SCIENCE, 1999, 45 (07) :995-1007
[7]   A gridding method for Bayesian sequential decision problems [J].
Brockwell, AE ;
Kadane, JB .
JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2003, 12 (03) :566-584
[8]   Adaptive Design Optimization: A Mutual Information-Based Approach to Model Discrimination in Cognitive Science [J].
Cavagnaro, Daniel R. ;
Myung, Jay I. ;
Pitt, Mark A. ;
Kujala, Janne V. .
NEURAL COMPUTATION, 2010, 22 (04) :887-905
[9]   OPTIMAL BAYESIAN DESIGN APPLIED TO LOGISTIC-REGRESSION EXPERIMENTS [J].
CHALONER, K ;
LARNTZ, K .
JOURNAL OF STATISTICAL PLANNING AND INFERENCE, 1989, 21 (02) :191-208
[10]   Bayesian experimental design: A review [J].
Chaloner, K ;
Verdinelli, I .
STATISTICAL SCIENCE, 1995, 10 (03) :273-304