Drug Vector Minimization in Cancer Therapy based on Boolean Logic Model of Gene Regulatory Network

被引:4
作者
Muhuri, Samya [1 ]
Sarkar, Ananya [1 ]
Chakraborty, Sambhabi [2 ]
Chakraborty, Susanta [1 ]
机构
[1] Indian Inst Engn Sci & Technol, Dept Comp Sci & Technol, Shibpur Howrah, India
[2] KPC Med Coll & Hosp, Jadavpur, India
来源
2018 18TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING WORKSHOPS (ICDMW) | 2018年
关键词
drug vector; gene regulatory network; signalling pathways; RAS;
D O I
10.1109/ICDMW.2018.00042
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Cell signalling regulates and coordinates the action of the cells. After receiving any external stimuli, gene regulatory networks (GRN) activated by the signalling pathways. GRN is the biological representation of the molecular regulators. In computational logic, the GRNs can be visualized as the Boolean logic model where interactions between the different pathway components are modelled with Boolean logic gates. Sometimes cells acquire genetic alterations that drive adverse transcriptional methods and results pathway faults. These aberrant cell signalling and pathway faults are the primary cause of cancer. The defects in the signalling pathway can be mapped as the faults in the Boolean network. The available drug set can overturn some of the faults in the GRN and is used in the therapeutic purposes. In this paper, we propose a novel method to identify the minimized drug set for the breast cancer based on the experimental findings of the corresponding growth factor (GF) pathways. The test pattern of drug vector covers maximum malfunctions and generates non-cancerous state. The minimized drug vector will reduce the cost of drug and the chance of drug side effects. Alongside, the suggestion for the drug location is also given which may be employed by the biologist in future to develop some new drug set for advanced treatment. The proposed technique is more accurate and generalized than the other methods and can be utilized in interdisciplinary research areas.
引用
收藏
页码:237 / 243
页数:7
相关论文
共 12 条
  • [1] Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models
    Alden, Kieran
    Timmis, Jon
    Andrews, Paul S.
    Veiga-Fernandes, Henrique
    Coles, Mark C.
    [J]. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 14 (02) : 431 - 442
  • [2] Emerging Targeted Therapies for Breast Cancerd
    Alvarez, Ricardo H.
    Valero, Vicente
    Hortobagyi, Gabriel N.
    [J]. JOURNAL OF CLINICAL ONCOLOGY, 2010, 28 (20) : 3366 - 3379
  • [3] Using Boolean Logic Modeling of Gene Regulatory Networks to Exploit the Links Between Cancer and Metabolism for Therapeutic Purposes
    Arshad, Osama A.
    Venkatasubramani, Priyadharshini S.
    Datta, Aniruddha
    Venkatraj, Jijayanagaram
    [J]. IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2016, 20 (01) : 399 - 407
  • [4] Foo M., 2018, IEEE ACM T COMPUTATI
  • [5] Phosphatidylinositol-3-OH kinase or RAS pathway mutations in human breast cancer cell lines
    Hollestelle, Antoinette
    Elstrodt, Fons
    Nagel, Jord H. A.
    Kallemeijn, Wouter W.
    Schutte, Mieke
    [J]. MOLECULAR CANCER RESEARCH, 2007, 5 (02) : 195 - 201
  • [6] Cancer therapy design based on pathway logic
    Layek, Ritwik
    Datta, Aniruddha
    Bittner, Michael
    Dougherty, Edward R.
    [J]. BIOINFORMATICS, 2011, 27 (04) : 548 - 555
  • [7] From biological pathways to regulatory networks
    Layek, Ritwik K.
    Datta, Aniruddha
    Dougherty, Edward R.
    [J]. MOLECULAR BIOSYSTEMS, 2011, 7 (03) : 843 - 851
  • [8] Biological Pathway Analysis for de novo Transcriptomes through Multiple Reference Species Selections
    Liu, Chun-Cheng
    Chen, Chien-Ming
    Yang, Cin-Han
    Pai, Tun-Wen
    Lim, Phaik-Eem
    Phang, Siew-Moi
    Poong, Sze-Wan
    Lee, Kok-Keong
    [J]. PROCEEDINGS OF 2016 10TH INTERNATIONAL CONFERENCE ON COMPLEX, INTELLIGENT, AND SOFTWARE INTENSIVE SYSTEMS (CISIS), 2016, : 210 - 214
  • [9] A Model for Cancer Tissue Heterogeneity
    Mohanty, Anwoy Kumar
    Datta, Aniruddha
    Venkatraj, Vijayanagaram
    [J]. IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2014, 61 (03) : 966 - 974
  • [10] Molecular targeted therapies for breast cancer treatment
    Schlotter, Claus M.
    Vogt, Ulf
    Allgayer, Heike
    Brandt, Burkhard
    [J]. BREAST CANCER RESEARCH, 2008, 10 (04)