The Roles of Arabidopsis CDF2 in Transcriptional and Posttranscriptional Regulation of Primary MicroRNAs

被引:57
作者
Sun, Zhenfei [1 ]
Guo, Tongtong [1 ]
Liu, Yin [1 ]
Liu, Qi [1 ]
Fang, Yuda [1 ]
机构
[1] Chinese Acad Sci, Shanghai Inst Biol Sci, Shanghai Inst Plant Physiol & Ecol, Natl Key Lab Plant Mol Genet, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
NUCLEAR DICING BODIES; BINDING-PROTEIN; FLOWER DEVELOPMENT; DOMAIN PROTEINS; GENE; PLANTS; BIOGENESIS; MATURATION; FAMILY; EXPRESSION;
D O I
10.1371/journal.pgen.1005598
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The precise regulation of microRNA (miRNA) transcription and processing is important for eukaryotic development. Plant miRNAs are first transcribed as stem-loop primary miRNAs (pri-miRNAs) by RNA polymerase II, then cleaved in the nucleus into mature miRNAs by Dicer-like 1 (DCL1). We identified a cycling DOF transcription factor, CDF2, which interacts with DCL1 and regulates the accumulation of a population of miRNAs. CDF2 binds directly to the promoters of some miRNAs and works as a transcription activator or repressor for these miRNA genes. CDF2 binds preferentially to the pri-miRNAs regulated by itself and affects DCL1-mediated processing of these pri-miRNAs. Genetically, CDF2 works in the same pathway as miR156 or miR172 to control flowering. We conclude that CDF2 regulates a group of pri-miRNAs at both the transcriptional and posttranscriptional levels to maintain proper levels of their mature miRNAs to control plant development.
引用
收藏
页数:19
相关论文
共 53 条
[1]   Specialization and evolution of endogenous small RNA pathways [J].
Chapman, Elisabeth J. ;
Carrington, James C. .
NATURE REVIEWS GENETICS, 2007, 8 (11) :884-896
[2]   A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development [J].
Chen, XM .
SCIENCE, 2004, 303 (5666) :2022-2025
[3]   MeCP2 Suppresses Nuclear MicroRNA Processing and Dendritic Growth by Regulating the DGCR8/Drosha Complex [J].
Cheng, Tian-Lin ;
Wang, Zhizhi ;
Liao, Qiuming ;
Zhu, Ying ;
Zhou, Wen-Hao ;
Xu, Wenqing ;
Qiu, Zilong .
DEVELOPMENTAL CELL, 2014, 28 (05) :547-560
[4]   COP1 E3 ligase protects HYL1 to retain microRNA biogenesis [J].
Cho, Seok Keun ;
Ben Chaabane, Samir ;
Shah, Pratik ;
Poulsen, Christian Peter ;
Yang, Seong Wook .
NATURE COMMUNICATIONS, 2014, 5
[5]   Floral dip:: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana [J].
Clough, SJ ;
Bent, AF .
PLANT JOURNAL, 1998, 16 (06) :735-743
[6]   Cluster analysis and display of genome-wide expression patterns [J].
Eisen, MB ;
Spellman, PT ;
Brown, PO ;
Botstein, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868
[7]  
Fang X, 2015, NATURE PLANTS
[8]   Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants [J].
Fang, Yuda ;
Spector, David L. .
CURRENT BIOLOGY, 2007, 17 (09) :818-823
[9]   Arabidopsis DOF Transcription Factors Act Redundantly to Reduce CONSTANS Expression and Are Essential for a Photoperiodic Flowering Response [J].
Fornara, Fabio ;
Panigrahi, Kishore C. S. ;
Gissot, Lionel ;
Sauerbrunn, Nicolas ;
Ruehl, Mark ;
Jarillo, Jose A. ;
Coupland, George .
DEVELOPMENTAL CELL, 2009, 17 (01) :75-86
[10]   miRBase: tools for microRNA genomics [J].
Griffiths-Jones, Sam ;
Saini, Harpreet Kaur ;
van Dongen, Stijn ;
Enright, Anton J. .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D154-D158