Valproic acid induces prosurvival transcriptomic changes in swine subjected to traumatic injury and hemorrhagic shock

被引:25
作者
Georgoff, Patrick E. [1 ]
Nikolian, Vahagn C. [1 ]
Higgins, Gerald [2 ]
Chtraklin, Kiril [1 ]
Eidy, Hassan [1 ]
Ghandour, Mohamed H. [1 ]
Williams, Aaron [1 ]
Athey, Brian [2 ]
Alam, Hasan B. [1 ]
机构
[1] Univ Michigan, Dept Surg, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
关键词
Valproic acid; histone deacetylase inhibitor; genomics; RNA sequencing; trauma; hemorrhage; traumatic brain injury; HISTONE DEACETYLASE INHIBITORS; GENE-EXPRESSION PROFILES; BRAIN-INJURY; PHARMACOLOGICAL RESUSCITATION; CHROMATIN-STRUCTURE; LESION SIZE; MODEL; MECHANISMS; BIOCONDUCTOR; INFLAMMATION;
D O I
10.1097/TA.0000000000001763
中图分类号
R4 [临床医学];
学科分类号
1002 ; 100602 ;
摘要
BACKGROUND: Valproic acid (VPA) is a histone deacetylase inhibitor that improves outcomes in large animal models of trauma. However, its protective mechanism of action is not completely understood. We sought to characterize the genetic changes induced by VPA treatment following traumatic injuries. METHODS: Six female Yorkshire swine were subjected to traumatic brain injury (controlled cortical impact), polytrauma (liver and splenic laceration, rib fracture, rectus crush), and hemorrhagic shock (HS, 40% total blood volume). Following 2 hours of HS, animals were randomized to resuscitation with normal saline (NS) or NS + 150 mg/kg of intravenous VPA (n = 3/cohort, 18 samples total). Blood samples were collected for isolation of peripheral blood mononuclear cells at three distinct time points: baseline, 6 hours following injuries, and on postinjury day 1. RNA was extracted from peripheral blood mononuclear cells and sequenced. Differential expression analysis (false discovery rate < 0.001 and p value <0.001) and gene set enrichment (Panther Gene Ontology and Ingenuity Pathway Analysis) was used to compare VPA to non-VPA-treated animals. RESULTS: A total of 628 differentially expressed RNA transcripts were identified, 412 of which were used for analysis. There was no difference between treatment groups at baseline. The VPA-induced genetic changes were similar at 6 hours and on postinjury day 1. Upregulated genes were associated with gene expression (p 2.13E-34), cellular development (1.19E-33), cellular growth and proliferation (1.25E-30), and glucocorticoid receptor signaling (8.6E-21). Downregulated genes were associated with cell cycle checkpoint regulation (3.64E-22), apoptosis signaling (6.54E-21), acute phase response signaling (5.84E-23), and the inflammasome pathway (1.7E-19). CONCLUSION: In injured swine, VPA increases the expression of genes associated with cell survival, proliferation, and differentiation and decreases those associated with cell death and inflammation. These genetic changes could explain the superior clinical outcomes in VPA-treated animals, including smaller brain lesion size and improved neurologic recovery. (C) 2017 Wolters Kluwer Health, Inc. All rights reserved.
引用
收藏
页码:642 / 649
页数:8
相关论文
共 48 条
  • [1] Surviving blood loss without blood transfusion in a swine poly-trauma model
    Alam, Hasan B.
    Shuja, Fahad
    Butt, Muhammad U.
    Duggan, Michael
    Li, Yongqing
    Zacharias, Nikolaos
    Fukudome, Eugene Y.
    Liu, Baoling
    deMoya, Marc
    Velmahos, George C.
    [J]. SURGERY, 2009, 146 (02) : 325 - 333
  • [2] Differential expression analysis for sequence count data
    Anders, Simon
    Huber, Wolfgang
    [J]. GENOME BIOLOGY, 2010, 11 (10):
  • [3] Histone deacetylase inhibitor (HDACI) mechanisms of action: Emerging insights
    Bose, Prithviraj
    Dai, Yun
    Grant, Steven
    [J]. PHARMACOLOGY & THERAPEUTICS, 2014, 143 (03) : 323 - 336
  • [4] BOYUM A, 1977, LYMPHOLOGY, V10, P71
  • [5] Expansion of the Gene Ontology knowledgebase and resources
    Carbon, S.
    Dietze, H.
    Lewis, S. E.
    Mungall, C. J.
    Munoz-Torres, M. C.
    Basu, S.
    Chisholm, R. L.
    Dodson, R. J.
    Fey, P.
    Thomas, P. D.
    Mi, H.
    Muruganujan, A.
    Huang, X.
    Poudel, S.
    Hu, J. C.
    Aleksander, S. A.
    McIntosh, B. K.
    Renfro, D. P.
    Siegele, D. A.
    Antonazzo, G.
    Attrill, H.
    Brown, N. H.
    Marygold, S. J.
    McQuilton, P.
    Ponting, L.
    Millburn, G. H.
    Rey, A. J.
    Stefancsik, R.
    Tweedie, S.
    Falls, K.
    Schroeder, A. J.
    Courtot, M.
    Osumi-Sutherland, D.
    Parkinson, H.
    Roncaglia, P.
    Lovering, R. C.
    Foulger, R. E.
    Huntley, R. P.
    Denny, P.
    Campbell, N. H.
    Kramarz, B.
    Patel, S.
    Buxton, J. L.
    Umrao, Z.
    Deng, A. T.
    Alrohaif, H.
    Mitchell, K.
    Ratnaraj, F.
    Omer, W.
    Rodriguez-Lopez, M.
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D331 - D338
  • [6] Gene expression inference with deep learning
    Chen, Yifei
    Li, Yi
    Narayan, Rajiv
    Subramanian, Aravind
    Xie, Xiaohui
    [J]. BIOINFORMATICS, 2016, 32 (12) : 1832 - 1839
  • [7] Effect of pharmacologic resuscitation on the brain gene expression profiles in a swine model of traumatic brain injury and hemorrhage
    Maier, Ronald V.
    [J]. JOURNAL OF TRAUMA AND ACUTE CARE SURGERY, 2014, 77 (06) : 912 - 912
  • [8] Roles of histone deacetylases in epigenetic regulation: emerging paradigms from studies with inhibitors
    Delcuve, Genevieve P.
    Khan, Dilshad H.
    Davie, James R.
    [J]. CLINICAL EPIGENETICS, 2012, 4
  • [9] STAR: ultrafast universal RNA-seq aligner
    Dobin, Alexander
    Davis, Carrie A.
    Schlesinger, Felix
    Drenkow, Jorg
    Zaleski, Chris
    Jha, Sonali
    Batut, Philippe
    Chaisson, Mark
    Gingeras, Thomas R.
    [J]. BIOINFORMATICS, 2013, 29 (01) : 15 - 21
  • [10] Chromatin Remodeling, Cell Proliferation and Cell Death in Valproic Acid-Treated HeLa Cells
    Felisbino, Marina Barreto
    Tamashiro, Wirla M. S. C.
    Mello, Maria Luiza S.
    [J]. PLOS ONE, 2011, 6 (12):