Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

被引：563

作者：

Zhang, Gengyun ^{[1
]}

Liu, Xin

Quan, Zhiwu ^{[1
]}

Cheng, Shifeng

Xu, Xun ^{[1
,2
]}

Pan, Shengkai

Xie, Min

Zeng, Peng

Yue, Zhen

Wang, Wenliang

Tao, Ye

Bian, Chao

Han, Changlei

Xia, Qiuju ^{[1
]}

Peng, Xiaohua ^{[1
]}

Cao, Rui

Yang, Xinhua

Zhan, Dongliang

Hu, Jingchu

Zhang, Yinxin ^{[1
]}

Li, Henan ^{[1
]}

Li, Hua ^{[1
]}

Li, Ning ^{[1
]}

Wang, Junyi

Wang, Chanchan ^{[1
]}

Wang, Renyi ^{[1
]}

Guo, Tao ^{[1
]}

Cai, Yanjie ^{[1
]}

Liu, Chengzhang ^{[1
]}

Xiang, Haitao ^{[1
]}

Shi, Qiuxiang ^{[1
]}

Huang, Ping ^{[1
]}

Chen, Qingchun ^{[1
]}

Li, Yingrui

Wang, Jun ^{[3
]}

Zhao, Zhihai ^{[4
]}

Wang, Jian ^{[1
]}

机构：

[1] Chinese Minist Agr, BGI Shenzhen, Key Lab Genom, Shenzhen, Peoples R China

[2] BGI Amer, Cambridge, MA USA

[3] Univ Copenhagen, Dept Biol, Copenhagen, Denmark

[4] Zhangjiakou Acad Agr Sci, Inst Millet, Zhangjiakou, Peoples R China

来源：

NATURE BIOTECHNOLOGY | 2012年 / 30卷 / 06期

基金：

国家杰出青年科学基金;

关键词：

MOLECULAR EVOLUTION; CARBONIC-ANHYDRASE; GENE; IDENTIFICATION; ALIGNMENT; CONSTRUCTION; RESISTANCE; REVEALS; PROGRAM; MAPS;

D O I：

10.1038/nbt.2195

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Foxtail millet (Setaria italica), a member of the Poaceae grass family, is an important food and fodder crop in arid regions and has potential for use as a C-4 biofuel. It is a model system for other biofuel grasses, including switchgrass and pearl millet. We produced a draft genome (similar to 423 Mb) anchored onto nine chromosomes and annotated 38,801 genes. Key chromosome reshuffling events were detected through collinearity identification between foxtail millet, rice and sorghum including two reshuffling events fusing rice chromosomes 7 and 9, 3 and 10 to foxtail millet chromosomes 2 and 9, respectively, that occurred after the divergence of foxtail millet and rice, and a single reshuffling event fusing rice chromosome 5 and 12 to foxtail millet chromosome 3 that occurred after the divergence of millet and sorghum. Rearrangements in the C-4 photosynthesis pathway were also identified.

引用

页码：549 / +

页数：8

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