Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment

被引:132
作者
Ichihashi, Norikazu [1 ,2 ]
Usui, Kimihito [1 ]
Kazuta, Yasuaki [1 ]
Sunami, Takeshi [1 ,2 ]
Matsuura, Tomoaki [1 ,2 ,3 ]
Yomo, Tetsuya [1 ,2 ,4 ]
机构
[1] Osaka Univ, Japan Sci & Technol Agcy, Suita, Osaka 5650871, Japan
[2] Osaka Univ, Grad Sch Informat Sci & Technol, Suita, Osaka 5650871, Japan
[3] Osaka Univ, Grad Sch Engn, Suita, Osaka 5650871, Japan
[4] Osaka Univ, Grad Sch Frontier Biosci, Suita, Osaka 5650871, Japan
关键词
IN-VITRO EVOLUTION; SYNTHETIC BIOLOGY; ESCHERICHIA-COLI; SELF-REPLICATION; MODEL PROTOCELL; VESICLES; LIFE; AMPLIFICATION; GROWTH;
D O I
10.1038/ncomms3494
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The ability to evolve is a key characteristic that distinguishes living things from non-living chemical compounds. The construction of an evolvable cell-like system entirely from non-living molecules has been a major challenge. Here we construct an evolvable artificial cell model from an assembly of biochemical molecules. The artificial cell model contains artificial genomic RNA that replicates through the translation of its encoded RNA replicase. We perform a long-term (600-generation) replication experiment using this system, in which mutations are spontaneously introduced into the RNA by replication error, and highly replicable mutants dominate the population according to Darwinian principles. During evolution, the genomic RNA gradually reinforces its interaction with the translated replicase, thereby acquiring competitiveness against selfish (parasitic) RNAs. This study provides the first experimental evidence that replicating systems can be developed through Darwinian evolution in a cell-like compartment, even in the presence of parasitic replicators.
引用
收藏
页数:7
相关论文
共 41 条
[1]  
[Anonymous], 1999, The Origins of Life
[2]   COLIPHAGE Q-BETA RNA REPLICATION - RNA CATALYTIC FOR SINGLE-STRAND RELEASE [J].
AXELROD, VD ;
BROWN, E ;
PRIANO, C ;
MILLS, DR .
VIROLOGY, 1991, 184 (02) :595-608
[3]   Importance of Parasite RNA Species Repression for Prolonged Translation-Coupled RNA Self-Replication [J].
Bansho, Yohsuke ;
Ichihashi, Norikazu ;
Kazuta, Yasuaki ;
Matsuura, Tomoaki ;
Suzuki, Hiroaki ;
Yomo, Tetsuya .
CHEMISTRY & BIOLOGY, 2012, 19 (04) :478-487
[4]   Genome evolution and adaptation in a long-term experiment with Escherichia coli [J].
Barrick, Jeffrey E. ;
Yu, Dong Su ;
Yoon, Sung Ho ;
Jeong, Haeyoung ;
Oh, Tae Kwang ;
Schneider, Dominique ;
Lenski, Richard E. ;
Kim, Jihyun F. .
NATURE, 2009, 461 (7268) :1243-U74
[5]   Synthetic biology [J].
Benner, SA ;
Sismour, AM .
NATURE REVIEWS GENETICS, 2005, 6 (07) :533-543
[6]   EMERGENCE OF A REPLICATING SPECIES FROM AN IN-VITRO RNA EVOLUTION REACTION [J].
BREAKER, RR ;
JOYCE, GF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (13) :6093-6097
[7]   HYPERCYCLES, PARASITES AND PACKAGES [J].
BRESCH, C ;
NIESERT, U ;
HARNASCH, D .
JOURNAL OF THEORETICAL BIOLOGY, 1980, 85 (03) :399-405
[8]   RNA catalysis in model protocell vesicles [J].
Chen, IA ;
Salehi-Ashtiani, K ;
Szostak, JW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (38) :13213-13219
[9]   Membrane growth can generate a transmembrane pH gradient in fatty acid vesicles [J].
Chen, IA ;
Szostak, JW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (21) :7965-7970
[10]   Chemical approaches to synthetic biology [J].
Chiarabelli, Cristiano ;
Stano, Pasquale ;
Luisi, Pier Luigi .
CURRENT OPINION IN BIOTECHNOLOGY, 2009, 20 (04) :492-497