Rapid Accumulation of Mutations in Growing Mycelia of a Hypervariable Fungus Schizophyllum commune

被引:10
作者
Bezmenova, Aleksandra, V [1 ]
Zvyagina, Elena A. [2 ]
Fedotova, Anna, V [1 ,3 ]
Kasianov, Artem S. [4 ,5 ]
Neretina, Tatiana, V [3 ,4 ,6 ]
Penin, Aleksey A. [3 ,4 ]
Bazykin, Georgii A. [1 ,4 ]
Kondrashov, Alexey S. [3 ,7 ]
机构
[1] Skoltech, Ctr Life Sci, Moscow, Russia
[2] Surgut State Univ, Surgut, Russia
[3] Lomonosov Moscow State Univ, Belozersky Inst Phys Chem Biol, Moscow, Russia
[4] Kharkevich Inst Informat Transmiss Problems, Moscow, Russia
[5] Vavilov Inst Gen Genet, Moscow, Russia
[6] Lomonosov Moscow State Univ, NA Pertsov White Sea Biol Stn, Primorskiy, Russia
[7] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI USA
基金
俄罗斯科学基金会;
关键词
mutation rate; somatic mutation rate; Schizophyllum commune; SELECTION; SEQUENCE;
D O I
10.1093/molbev/msaa083
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The basidiomycete Schizophyllum commune has the highest level of genetic polymorphism known among living organisms. In a previous study, it was also found to have a moderately high per-generation mutation rate of 2x10(-8), likely contributing to its high polymorphism. However, this rate has been measured only in an experiment on Petri dishes, and it is unclear how it translates to natural populations. Here, we used an experimental design that measures the rate of accumulation of de novo mutations in a linearly growingmycelium. We show that S. commune accumulatesmutations at a rate of 1.24x10(-7) substitutions per nucleotide per meter of growth, or similar to 2.04x10(-11) per nucleotide per cell division. In contrast to what has been observed in a number of species with extensive vegetative growth, this rate does not decline in the course of propagation of a mycelium. As a result, even a moderate per-cell-division mutation rate in S. commune can translate into a very high per-generation mutation rate when the number of cell divisions between consecutive meiosis is large.
引用
收藏
页码:2279 / 2286
页数:8
相关论文
共 28 条
[1]   Clonal evolution and genome stability in a 2500-year-old fungal individual [J].
Anderson, James B. ;
Bruhn, Johann N. ;
Kasimer, Dahlia ;
Wang, Hao ;
Rodrigue, Nicolas ;
Smith, Myron L. .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2018, 285 (1893)
[2]   Genomewide mutation dynamic within a long-lived individual of Armillaria gallica [J].
Anderson, James B. ;
Catona, Stefan .
MYCOLOGIA, 2014, 106 (04) :642-648
[3]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[4]   Extraordinary Genetic Diversity in a Wood Decay Mushroom [J].
Baranova, Maria A. ;
Logacheva, Maria D. ;
Penin, Aleksey A. ;
Seplyarskiy, Vladimir B. ;
Safonova, Yana Y. ;
Naumenko, Sergey A. ;
Klepikova, Anna V. ;
Gerasimov, Evgeny S. ;
Bazykin, Georgii A. ;
James, Timothy Y. ;
Kondrashov, Alexey S. .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (10) :2775-2783
[5]   Aligning multiple genomic sequences with the threaded blockset aligner [J].
Blanchette, M ;
Kent, WJ ;
Riemer, C ;
Elnitski, L ;
Smit, AFA ;
Roskin, KM ;
Baertsch, R ;
Rosenbloom, K ;
Clawson, H ;
Green, ED ;
Haussler, D ;
Miller, W .
GENOME RESEARCH, 2004, 14 (04) :708-715
[7]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[8]  
Doyle J.L.D., 1987, Phytochem. Bull.
[9]  
Essig FM, 1922, MORPHOLOGY DEV ECONO
[10]   THE DYNAMICS OF HYPHAL GROWTH [J].
GOODAY, GW .
MYCOLOGICAL RESEARCH, 1995, 99 :385-394