Marinomonas piezotolerans sp. nov., isolated from deep-sea sediment of the Yap Trench, Pacific Ocean

被引:8
作者
Yu, Libo [1 ,2 ]
Zhou, Zhidong [3 ]
Wei, Shiping [4 ]
Xu, Xiashutong [2 ,4 ]
Wang, Qilin [2 ,4 ]
Xu, Guangxin [2 ,4 ]
Tang, Xixiang [2 ]
Yang, Qian [1 ]
机构
[1] Harbin Inst Technol, Sch Life Sci & Technol, Harbin 150080, Heilongjiang, Peoples R China
[2] State Ocean Adm, Key Lab Marine Genet Resources, Inst Oceanog 3, Xiamen 361005, Peoples R China
[3] Fujian Inst Oceanog, Marine Biol Lab, Xiamen 361013, Peoples R China
[4] China Univ Geosci Beijing, Sch Ocean Sci, Beijing 100083, Peoples R China
关键词
Marinomonas piezotolerans sp. nov; deep-sea sediment; Yap Trench; SEQUENCES; DATABASE;
D O I
10.1099/ijsem.0.003227
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-negative, aerobic and rod-shaped strain, YLB-(T), was isolated from a sample of deep-sea sediment (depth, 6796 m) from the Yap Trench. It was motile, oxidase-positive and catalase-positive. Growth was observed at salinities of 1-12 % (NaCl, w/v), with the optimum at 5 %. The strain was able to thrive at low (4 degrees C) temperatures, with the optimum at 37 degrees C, but did not grow at 50 degrees C. The optimum pressure for growth was 0.1 MPa with tolerance up to 50 MPa. The 16S rRNA gene sequencing analysis showed that YLB-05(T) was most closely related to Marinomonas communis LMG 2864(T) (97.8 %). Phylogenetic analysis placed strain YLB-05(T )within the genus Marinomonas. The average nucleotide identity and the DNA-DNA hybridization values between strain YLB-05(T) and closely related type strains were below the respective thresholds for species differentiation. The principal fatty acids were C-16(:0), summed feature 8 (C-18(:1)omega 7c and/or C-18:(1)omega 6c) and summed feature 3 (C-16:1 omega 7c/(C16:)(1)omega 6c). The DNA G+C content was 45.7 mol%. The respiratory quinone was determined to be Q-8. The polar lipids were an unidentified phospholipid and an unidentified aminophospholipid. The combined genotypic and phenotypic data showed that strain YLB-05(T) represents a novel species within the genus Marinomonas, for which the name Marinomonas piezotolerans sp. nov. is proposed, with the type strain YLB-05(T) (=MCCC 1A12712(T) =KCTC 62812(T)).
引用
收藏
页码:739 / 744
页数:6
相关论文
共 38 条
[1]   Marinomonas blandensis sp nova, a novel marine gammaproteobacterium [J].
Arahal, David R. ;
Lucena, Teresa ;
Carmen Macian, M. ;
Ruvira, Maria A. ;
Gonzalez, Jose M. ;
Lekumberri, Itziar ;
Pinhassi, Jarone ;
Pujalte, Maria J. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :5544-5549
[2]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[3]   Marinomonas basaltis sp nov., a marine bacterium isolated from black sand [J].
Chang, Ho-Won ;
Roh, Seong Woon ;
Kim, Kyoung-Ho ;
Nam, Young-Do ;
Yoon, Jung-Hoon ;
Oh, Hee-Mock ;
Bae, Jin-Woo .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :2743-2747
[4]  
Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]
[5]   ARCHAEA IN COASTAL MARINE ENVIRONMENTS [J].
DELONG, EF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5685-5689
[6]  
Dong X, 2001, DETERMINATIVE MANUAL
[7]   Deep-sea piezosphere and piezophiles: geomicrobiology and biogeochemistry [J].
Fang, Jiasong ;
Zhang, Li ;
Bazylinski, Dennis A. .
TRENDS IN MICROBIOLOGY, 2010, 18 (09) :413-422
[8]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[9]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91
[10]   Hadal trenches: the ecology of the deepest places on Earth [J].
Jamieson, Alan J. ;
Fujii, Toyonobu ;
Mayor, Daniel J. ;
Solan, Martin ;
Priede, Imants G. .
TRENDS IN ECOLOGY & EVOLUTION, 2010, 25 (03) :190-197