Taxonomic reassessment of the genus Elizabethkingia using whole-genome sequencing: Elizabethkingia endophytica Kampfer et al. 2015 is a later subjective synonym of Elizabethkingia anophelis Kampfer et al. 2011

被引：32
作者：
Doijad, Swapnil [1 ,2 ]
Ghosh, Hiren [1 ,2 ]
Glaeser, Stefanie [3 ]
Kaempfer, Peter [3 ]
Chakraborty, Trinad [1 ,2 ]
机构：
[1] Univ Giessen, Inst Med Microbiol, D-35392 Giessen, Hesse, Germany
[2] Univ Giessen, German Ctr Infect Res DZIF, Partner Site Giessen Marburg Langen, Giessen, Germany
[3] Univ Giessen, Inst Angew Mikrobiol, Giessen, Germany
来源：
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY | 2016年 / 66卷
关键词：
STANDARD;
D O I：
10.1099/ijsem.0.001390
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
The taxonomic status of all species of the genus Elizabethkingia was re-evaluated by comparative genomics based on whole-genome sequencing. From these results it is clear that Elizabethkingia endophytica is a later subjective synonym of Elizabethkingia anophelis. In addition, genome-based analysis revealed the misidentification of isolates previously identified by traditional approaches and indicates the presence of two more species. We propose a more rapid identification scheme on the basis of an in silico PCR assay derived from comparative genomics of whole-genome sequences (WGS) from 29 well-curated strains.
引用
收藏
页码：4555 / 4559
页数：5
相关论文
共 13 条
  • [1] Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
    Auch, Alexander F.
    von Jan, Mathias
    Klenk, Hans-Peter
    Goeker, Markus
    [J]. STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01): : 117 - 134
  • [2] Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
    Auch, Alexander F.
    Klenk, Hans-Peter
    Goeker, Markus
    [J]. STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01): : 142 - 148
  • [3] Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
    Colston, Sophie M.
    Fullmer, Matthew S.
    Beka, Lidia
    Lamy, Brigitte
    Gogarten, J. Peter
    Graf, Joerg
    [J]. MBIO, 2014, 5 (06):
  • [4] Elizabethkingia endophytica sp nova, isolated from Zea mays and emended description of Elizabethkingia anophelis Kampfer et al. 2011
    Kaempfer, Peter
    Busse, Hans-Juergen
    McInroy, John A.
    Glaeser, Stefanie P.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 : 2187 - 2193
  • [5] Elizabethkingia anophelis sp nov., isolated from the midgut of the mosquito Anopheles gambiae
    Kaempfer, Peter
    Matthews, Holly
    Glaeser, Stefanie P.
    Martin, Karin
    Lodders, Nicole
    Faye, Ingrid
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 : 2670 - 2675
  • [6] Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov as Elizabethkingia meningoseptica comb. nov and Elizabethkingia miricola comb. nov.
    Kim, KK
    Kim, MK
    Lim, JH
    Park, HY
    Lee, ST
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 : 1287 - 1293
  • [7] Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
    Kim, Mincheol
    Oh, Hyun-Seok
    Park, Sang-Cheol
    Chun, Jongsik
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 : 346 - 351
  • [8] Elizabethkingia anophelis bacteremia is associated with clinically significant infections and high mortality
    Lau, Susanna K. P.
    Chow, Wang-Ngai
    Foo, Chuen-Hing
    Curreem, Shirly O. T.
    Lo, George Chi-Shing
    Teng, Jade L. L.
    Chen, Jonathan H. K.
    Ng, Ricky H. Y.
    Wu, Alan K. L.
    Cheung, Ingrid Y. Y.
    Chau, Sandy K. Y.
    Lung, David C.
    Lee, Rodney A.
    Tse, Cindy W. S.
    Fung, Kitty S. C.
    Que, Tak-Lun
    Woo, Patrick C. Y.
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [9] Evidence for Elizabethkingia anophelis Transmission from Mother to Infant, Hong Kong
    Lau, Susanna K. P.
    Wu, Alan K. L.
    Teng, Jade L. L.
    Tse, Herman
    Curreem, Shirly O. T.
    Tsui, Stephen K. W.
    Huang, Yi
    Chen, Jonathan H. K.
    Lee, Rodney A.
    Yuen, Kwok-Yung
    Woo, Patrick C. Y.
    [J]. EMERGING INFECTIOUS DISEASES, 2015, 21 (02) : 232 - 241
  • [10] Draft Genome Sequence of Strain ATCC 33958, Reported To Be Elizabethkingia miricola
    Matyi, Stephanie A.
    Hoyt, Peter R.
    Ayoubi-Canaan, Patricia
    Hasan, Nabeeh A.
    Gustafson, John E.
    [J]. GENOME ANNOUNCEMENTS, 2015, 3 (04)
12