Allochromatium vinosum DsrC:: Solution-state NMR structure, redox properties, and interaction with DsrEFH, a protein essential for purple sulfur bacterial sulfur oxidation

被引:43
作者
Cort, John R. [3 ,4 ]
Selan, Ute [1 ]
Schulte, Andrea [1 ]
Grimm, Frauke [1 ]
Kennedy, Michael A. [2 ]
Dahl, Christiane [1 ]
机构
[1] Univ Bonn, Inst Mikrobiol & Biotechnol, D-53115 Bonn, Germany
[2] Miami Univ, Dept Chem & Biochem, Oxford, OH 45056 USA
[3] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
[4] Washington State Univ, Richland, WA 99354 USA
基金
美国国家卫生研究院;
关键词
dissimilatory sulfite reductase; DsrC; sulfur oxidation; NMR solution structure; anoxygenic phototrophic sulfur bacteria;
D O I
10.1016/j.jmb.2008.07.022
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Sequenced genomes of dissimilatory sulfur-oxidizing and sulfate-reducing bacteria containing genes coding for DsrAB, the enzyme dissimilatory sulfite reductase, inevitably also contain the gene coding for the 12-kDa DsrC protein. DsrC is thought to have a yet unidentified role associated with the activity of DsrAB. Here we report the solution structure of DsrC from the sulfur-oxidizing purple sulfur bacterium Allochromatium vinosum determined with NMR spectroscopy in reducing conditions, and we describe the redox behavior of two conserved cysteine residues upon transfer to an oxidizing environment. In reducing conditions, the DsrC structure is disordered in the highly conserved carboxy-terminus. We present multiple lines of evidence that, in oxidizing conditions, a strictly conserved cysteine (Cys111) at the penultimate position in the sequence forms an intramolecular disulfide bond with Cys100, which is conserved in DsrC in all organisms with DsrAB. While an intermolecular Cys111-Cys111 disulfide-bonded dimer is rapidly formed under oxidizing conditions, the intramolecularly disulfide-bonded species (Cys100-Cys111) is the thermodynamically stable form of the protein under these conditions. Treatment of the disulfidic forms with reducing agent regenerates the monomeric species that was structurally characterized. Using a band-shift technique under nondenaturing conditions, we obtained evidence for the interaction of DsrC with heterohexameric DsrEFH, a protein encoded in the same operon. Mutation of Cys100 to serine prevented formation of the DsrC species assigned as an intramolecular disulfide in oxidizing conditions, while still allowing formation of the intermolecular Cys111-Cys111 dimer. In the reduced form, this mutant protein still interacted with DsrEFH. This was not the case for the Cys111Ser and Cys100Ser/Cys111Ser mutants, both of which also did not form protein dimers. Our observations highlight the central importance of the carboxy-terminal DsrC cysteine residues and are consistent with a role as a sulfur-substrate binding/transferring protein, as well as with an electron-transfer function via thiol-disulfide interchanges. (C) 2008 Elsevier Ltd. All rights reserved.
引用
收藏
页码:692 / 707
页数:16
相关论文
共 46 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]  
BAILEY JL, 1959, J BIOL CHEM, V234, P1733
[3]   Electrostatics of nanosystems: Application to microtubules and the ribosome [J].
Baker, NA ;
Sept, D ;
Joseph, S ;
Holst, MJ ;
McCammon, JA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (18) :10037-10041
[4]  
Cavanagh J., 1996, PROTEIN NMR SPECTROS
[5]   REACTIONS OF INTER- AND INTRA-CHAIN DISULPHIDE BONDS IN PROTEINS WITH SULPHITE [J].
CECIL, R ;
WAKE, RG .
BIOCHEMICAL JOURNAL, 1962, 82 (03) :401-&
[6]   Multiple sequence alignment with the Clustal series of programs [J].
Chenna, R ;
Sugawara, H ;
Koike, T ;
Lopez, R ;
Gibson, TJ ;
Higgins, DG ;
Thompson, JD .
NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3497-3500
[7]   Protein backbone angle restraints from searching a database for chemical shift and sequence homology [J].
Cornilescu, G ;
Delaglio, F ;
Bax, A .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (03) :289-302
[8]   Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase [J].
Cort, JR ;
Mariappan, SVS ;
Kim, CY ;
Park, MS ;
Peat, TS ;
Waldo, GS ;
Terwilliger, TC ;
Kennedy, MA .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 2001, 268 (22) :5842-5850
[9]   Novel genes of the dsr gene cluster and evidence for close interaction of Dsr proteins during sulfur oxidation in the phototrophic sulfur bacterium Allochromatium vinosum [J].
Dahl, C ;
Engels, S ;
Pott-Sperling, AS ;
Schulte, A ;
Sander, J ;
Lübbe, Y ;
Deuster, O ;
Brune, DC .
JOURNAL OF BACTERIOLOGY, 2005, 187 (04) :1392-1404
[10]   DISSIMILATORY SULFITE REDUCTASE FROM ARCHAEOGLOBUS-FULGIDUS - PHYSICOCHEMICAL PROPERTIES OF THE ENZYME AND CLONING, SEQUENCING AND ANALYSIS OF THE REDUCTASE GENES [J].
DAHL, C ;
KREDICH, NM ;
DEUTZMANN, R ;
TRUPER, HG .
JOURNAL OF GENERAL MICROBIOLOGY, 1993, 139 :1817-1828