共 60 条
A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation
被引:153
作者:

Nakanishi, Shima
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA

Sanderson, Brian W.
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA

Delventhal, Kym M.
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA

Bradford, William D.
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA

Staehling-Hampton, Karen
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA

Shilatifard, Ali
论文数: 0 引用数: 0
h-index: 0
机构:
Stowers Inst Med Res, Kansas City, MO 64110 USA Stowers Inst Med Res, Kansas City, MO 64110 USA
机构:
[1] Stowers Inst Med Res, Kansas City, MO 64110 USA
关键词:
D O I:
10.1038/nsmb.1454
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Methylation of histone 3 lysine 4 (H3K4) by yeast Set1-COMPASS requires prior monoubiquitination of histone H2B. To define whether other residues within the histones are also required for H3K4 methylation, we systematically generated a complete library of the alanine substitutions of all of the residues of the four core histones in Saccharomyces cerevisiae. From this study we discovered that 18 residues within the four histones are essential for viability on complete growth media. We also identified several cis-regulatory residues on the histone H3 N-terminal tail, including histone H3 lysine 14 (H3K14), which are required for normal levels of H3K4 trimethylation. Several previously uncharacterized trans-regulatory residues on histones H2A and H2B form a patch on nucleosomes and are required for normal levels of methylation mediated by COMPASS. This library will be a valuable tool for defining the role of histone residues in processes requiring chromatin.
引用
收藏
页码:881 / 888
页数:8
相关论文
共 60 条
[1]
The complex language of chromatin regulation during transcription
[J].
Berger, Shelley L.
.
NATURE,
2007, 447 (7143)
:407-412

Berger, Shelley L.
论文数: 0 引用数: 0
h-index: 0
机构:
Wistar Inst Anat & Biol, Philadelphia, PA 19104 USA Wistar Inst Anat & Biol, Philadelphia, PA 19104 USA
[2]
Histone modifications in transcriptional regulation
[J].
Berger, SL
.
CURRENT OPINION IN GENETICS & DEVELOPMENT,
2002, 12 (02)
:142-148

Berger, SL
论文数: 0 引用数: 0
h-index: 0
机构:
Wistar Inst, Philadelphia, PA 19104 USA Wistar Inst, Philadelphia, PA 19104 USA
[3]
Genomic maps and comparative analysis of histone modifications in human and mouse
[J].
Bernstein, BE
;
Kamal, M
;
Lindblad-Toh, K
;
Bekiranov, S
;
Bailey, DK
;
Huebert, DJ
;
McMahon, S
;
Karlsson, EK
;
Kulbokas, EJ
;
Gingeras, TR
;
Schreiber, SL
;
Lander, ES
.
CELL,
2005, 120 (02)
:169-181

Bernstein, BE
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Kamal, M
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Lindblad-Toh, K
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Bekiranov, S
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Bailey, DK
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Huebert, DJ
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

论文数: 引用数:
h-index:
机构:

Karlsson, EK
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Kulbokas, EJ
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Gingeras, TR
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Schreiber, SL
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
[4]
Methylation of histone H3 Lys 4 in coding regions of active genes
[J].
Bernstein, BE
;
Humphrey, EL
;
Erlich, RL
;
Schneider, R
;
Bouman, P
;
Liu, JS
;
Kouzarides, T
;
Schreiber, SL
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2002, 99 (13)
:8695-8700

Bernstein, BE
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Humphrey, EL
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Erlich, RL
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Schneider, R
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Bouman, P
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Liu, JS
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Kouzarides, T
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA

Schreiber, SL
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[5]
Covalent modifications of histones during development and disease pathogenesis
[J].
Bhaumik, Sukesh R.
;
Smith, Edwin
;
Shilatifard, Ali
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2007, 14 (11)
:1008-1016

Bhaumik, Sukesh R.
论文数: 0 引用数: 0
h-index: 0
机构: So Illinois Univ, Sch Med, Dept Biochem & Mol Biol, Carbondale, IL 62901 USA

Smith, Edwin
论文数: 0 引用数: 0
h-index: 0
机构: So Illinois Univ, Sch Med, Dept Biochem & Mol Biol, Carbondale, IL 62901 USA

Shilatifard, Ali
论文数: 0 引用数: 0
h-index: 0
机构:
So Illinois Univ, Sch Med, Dept Biochem & Mol Biol, Carbondale, IL 62901 USA So Illinois Univ, Sch Med, Dept Biochem & Mol Biol, Carbondale, IL 62901 USA
[6]
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
[J].
Carrozza, MJ
;
Li, B
;
Florens, L
;
Suganuma, T
;
Swanson, SK
;
Lee, KK
;
Shia, WJ
;
Anderson, S
;
Yates, J
;
Washburn, MP
;
Workman, JL
.
CELL,
2005, 123 (04)
:581-592

Carrozza, MJ
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Li, B
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Florens, L
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Suganuma, T
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Swanson, SK
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Lee, KK
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Shia, WJ
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Anderson, S
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Yates, J
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Washburn, MP
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA

Workman, JL
论文数: 0 引用数: 0
h-index: 0
机构: Stowers Inst Med Res, Kansas City, MO 64110 USA
[7]
Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6
[J].
Dover, J
;
Schneider, J
;
Tawiah-Boateng, MA
;
Wood, A
;
Dean, K
;
Johnston, M
;
Shilatifard, A
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2002, 277 (32)
:28368-28371

Dover, J
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Schneider, J
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Tawiah-Boateng, MA
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Wood, A
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Dean, K
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Johnston, M
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA

Shilatifard, A
论文数: 0 引用数: 0
h-index: 0
机构: St Louis Univ, Sch Med, Dept Biochem, St Louis, MO 63104 USA
[8]
Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions
[J].
Govind, Chhabi K.
;
Zhang, Fan
;
Qiu, Hongfang
;
Hofmeyer, Kimberly
;
Hinnebusch, Alan G.
.
MOLECULAR CELL,
2007, 25 (01)
:31-42

Govind, Chhabi K.
论文数: 0 引用数: 0
h-index: 0
机构:
NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA

Zhang, Fan
论文数: 0 引用数: 0
h-index: 0
机构:
NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA

Qiu, Hongfang
论文数: 0 引用数: 0
h-index: 0
机构:
NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA

Hofmeyer, Kimberly
论文数: 0 引用数: 0
h-index: 0
机构:
NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA

Hinnebusch, Alan G.
论文数: 0 引用数: 0
h-index: 0
机构:
NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA NICHHD, Lab Gene Regulat & Dev, Bethesda, MD 20892 USA
[9]
Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive
[J].
Guccione, Ernesto
;
Bassi, Christian
;
Casadio, Fabio
;
Martinato, Francesca
;
Cesaroni, Matteo
;
Schuchlautz, Henning
;
Luescher, Bernhard
;
Amati, Bruno
.
NATURE,
2007, 449 (7164)
:933-U18

Guccione, Ernesto
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Bassi, Christian
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Casadio, Fabio
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Martinato, Francesca
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Cesaroni, Matteo
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Schuchlautz, Henning
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

Luescher, Bernhard
论文数: 0 引用数: 0
h-index: 0
机构: European Inst Oncol, Dept Expt Oncol, I-20139 Milan, Italy

论文数: 引用数:
h-index:
机构:
[10]
Histone H3 specific acetyltransferases are essential for cell cycle progression
[J].
Howe, L
;
Auston, D
;
Grant, P
;
John, S
;
Cook, RG
;
Workman, JL
;
Pillus, L
.
GENES & DEVELOPMENT,
2001, 15 (23)
:3144-3154

Howe, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

Auston, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

Grant, P
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

John, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

Cook, RG
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

Workman, JL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA

Pillus, L
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA Univ Calif San Diego, Div Biol, La Jolla, CA 92093 USA