Conserved host-pathogen PPIs plus Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds

被引:23
作者
Barh, Debmalya [1 ,2 ]
Gupta, Krishnakant [1 ,3 ]
Jain, Neha [1 ]
Khatri, Gourav [1 ,3 ]
Leon-Sicairos, Nidia [4 ]
Canizalez-Roman, Adrian [4 ]
Tiwari, Sandeep [1 ]
Verma, Ankit [1 ,3 ]
Rahangdale, Sachin [1 ,3 ]
Hassan, Syed Shah [5 ]
dos Santos, Anderson Rodrigues [5 ]
Ali, Amjad [5 ]
Guimaraes, Luis Carlos [5 ]
Juca Ramos, Rommel Thiago [6 ]
Devarapalli, Pratap [7 ]
Barve, Neha [1 ,3 ]
Bakhtiar, Marriam [5 ]
Kumavath, Ranjith [7 ]
Ghosh, Preetam [1 ,8 ,9 ]
Miyoshi, Anderson [5 ]
Silva, Artur [6 ]
Kumar, Anil [3 ]
Misra, Amarendra Narayan [2 ,10 ]
Blum, Kenneth [1 ,11 ,12 ,13 ]
Baumbach, Jan [14 ]
Azevedo, Vasco [5 ]
机构
[1] IIOAB, Ctr Genom & Appl Gene Technol, Purba Medinipur 721172, W Bengal, India
[2] Fakir Mohan Univ, Sch Biotechnol, Dept Biosci & Biotechnol, Balasore, Orissa, India
[3] Devi Ahilya Univ, Sch Biotechnol, Indore, MP, India
[4] Univ Autonoma Sinaloa Cedros & Sauces, Fac Med, Unidad Invest, Fraccionamiento Fresnos 80246, Culiacan Sinalo, Mexico
[5] Univ Fed Minas Gerais, Inst Ciencias Biol, Belo Horizonte, MG, Brazil
[6] Fed Univ Para, Inst Ciencias Biol, BR-66059 Belem, PA, Brazil
[7] Cent Univ Kerala, Sch Biol Sci, Dept Genom Sci, Kasaragod, India
[8] Virginia Commonwealth Univ, Dept Comp Sci, Richmond, VA 23284 USA
[9] Virginia Commonwealth Univ, Ctr Study Biol Complex, Richmond, VA 23284 USA
[10] Cent Univ Jharkhand, Sch Nat Sci, Ctr Life Sci, Ranchi, Jharkhand State, India
[11] Univ Florida, Coll Med, Gainesville, FL USA
[12] Univ Vermont, Coll Med, Ctr Clin & Translat Sci, Global Integrated Serv Unit, Burlington, VT USA
[13] Domin Diagnost LLC, North Kingstown, RI USA
[14] Univ So Denmark, Dept Math & Comp Sci, Computat Biol Grp, DK-5230 Odense, Denmark
关键词
PROTEIN INTERACTION NETWORK; CORYNEBACTERIUM-PSEUDOTUBERCULOSIS; YERSINIA-PESTIS; COMPUTATIONAL PREDICTION; CASEOUS-LYMPHADENITIS; COMPARATIVE GENOMICS; ESCHERICHIA-COLI; ESSENTIAL GENES; COG DATABASE; WEB;
D O I
10.1039/c2ib20206a
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Although attempts have been made to unveil protein-protein and host-pathogen interactions based on molecular insights of important biological events and pathogenesis in various organisms, these efforts have not yet been reported in Corynebacterium pseudotuberculosis (Cp), the causative agent of Caseous Lymphadenitis (CLA). In this study, we used computational approaches to develop common conserved intra-species protein-protein interaction (PPI) networks first time for four Cp strains (Cp FRC41, Cp 316, Cp 3/99-5, and Cp P54B96) followed by development of a common conserved inter-species bacterial PPI using conserved proteins in multiple pathogens (Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and all four Cp strains) and E. Coli based experimentally validated PPI data. Furthermore, the interacting proteins in the common conserved inter-species bacterial PPI were used to generate a conserved host-pathogen interaction (HP-PPI) network considering human, goat, sheep, bovine, and horse as hosts. The HP-PPI network was validated, and acetate kinase (Ack) was identified as a novel broad spectrum target. Ceftiofur, penicillin, and two natural compounds derived from Piper betel were predicted to inhibit Ack activity. One of these Piper betel compounds found to inhibit E. coli O157:H7 growth similar to penicillin. The target specificity of these betel compounds, their effects on other studied pathogens, and other in silico results are currently being validated and the results are promising.
引用
收藏
页码:495 / 509
页数:15
相关论文
共 108 条
[1]  
Aleman M, 1996, J AM VET MED ASSOC, V209, P804
[2]   In vitro antifungal activity of hydroxychavicol isolated from Piper betle L [J].
Ali, Intzar ;
Khan, Farrah G. ;
Suri, Krishan A. ;
Gupta, Bishan D. ;
Satti, Naresh K. ;
Dutt, Prabhu ;
Afrin, Farhat ;
Qazi, Ghulam N. ;
Khan, Inshad A. .
ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS, 2010, 9
[3]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[4]   Membrane sphingolipids as essential molecular signals for Bacteroides survival in the intestine [J].
An, Dingding ;
Na, Chongzheng ;
Bielawski, Jacek ;
Hannun, Yusuf A. ;
Kasper, Dennis L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 :4666-4671
[5]   Bioterror and "bioart'' - A plague o' both your houses [J].
Annas, GJ .
NEW ENGLAND JOURNAL OF MEDICINE, 2006, 354 (25) :2715-2720
[6]  
[Anonymous], UNIPROT KNOWLEDGEBAS
[7]  
[Anonymous], J COMPUT SCI SYST BI
[8]   The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling [J].
Arnold, K ;
Bordoli, L ;
Kopp, J ;
Schwede, T .
BIOINFORMATICS, 2006, 22 (02) :195-201
[9]   Type IV secretion systems and their effectors in bacterial pathogenesis [J].
Backert, S ;
Meyer, TF .
CURRENT OPINION IN MICROBIOLOGY, 2006, 9 (02) :207-217
[10]   A Novel Comparative Genomics Analysis for Common Drug and Vaccine Targets in Corynebacterium pseudotuberculosis and other CMN Group of Human Pathogens [J].
Barh, Debmalya ;
Jain, Neha ;
Tiwari, Sandeep ;
Parida, Bibhu Prasad ;
D'Afonseca, Vivian ;
Li, Liwei ;
Ali, Amjad ;
Santos, Anderson Rodrigues ;
Guimaraes, Luis Carlos ;
Soares, Siomar de Castro ;
Miyoshi, Anderson ;
Bhattacharjee, Atanu ;
Misra, Amarendra Narayan ;
Silva, Artur ;
Kumar, Anil ;
Azevedo, Vasco .
CHEMICAL BIOLOGY & DRUG DESIGN, 2011, 78 (01) :73-84