Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme

被引:142
作者
Boos, Felix [1 ]
Kraemer, Lena [1 ]
Groh, Carina [1 ]
Jung, Ferris [2 ]
Haberkant, Per [3 ]
Stein, Frank [3 ]
Wollweber, Florian [4 ]
Gackstatter, Adrian [1 ]
Zoeller, Eva [1 ]
van der Laan, Martin [4 ]
Savitski, Mikhail M. [3 ,5 ]
Benes, Vladimir [2 ]
Herrmann, Johannes M. [1 ]
机构
[1] Univ Kaiserslautern, Cell Biol, Kaiserslautern, Germany
[2] EMBL Heidelberg, Genom Core Facil, Heidelberg, Germany
[3] EMBL Heidelberg, Prote Core Facil, Heidelberg, Germany
[4] Saarland Univ, Ctr Mol Signaling, PZMS, Med Biochem & Mol Biol, Homburg, Germany
[5] EMBL Heidelberg, Genome Biol Unit, Heidelberg, Germany
关键词
FALSE DISCOVERY RATE; GENE-EXPRESSION; IMPORT; YEAST; PROTEASOME; BINDING; RNA; PCR; REGULATOR; DATABASE;
D O I
10.1038/s41556-019-0294-5
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The cytosolic accumulation of mitochondrial precursors is hazardous to cellular fitness and is associated with a number of diseases. However, it is not observed under physiological conditions. Individual mechanisms that allow cells to avoid cytosolic accumulation of mitochondrial precursors have recently been discovered, but their interplay and regulation remain elusive. Here, we show that cells rapidly launch a global transcriptional programme to restore cellular proteostasis after induction of a 'clogger' protein that reduces the number of available mitochondrial import sites. Cells upregulate the protein folding and proteolytic systems in the cytosol and downregulate both the cytosolic translation machinery and many mitochondrial metabolic enzymes, presumably to relieve the workload of the overstrained mitochondrial import system. We show that this transcriptional remodelling is a combination of a 'wideband' core response regulated by the transcription factors Hsfl and Rpn4 and a unique mitoprotein-induced downregulation of the oxidative phosphorylation components, mediated by an inactivation of the HAP complex.
引用
收藏
页码:442 / +
页数:13
相关论文
共 70 条
[21]   Genomic expression programs in the response of yeast cells to environmental changes [J].
Gasch, AP ;
Spellman, PT ;
Kao, CM ;
Carmel-Harel, O ;
Eisen, MB ;
Storz, G ;
Botstein, D ;
Brown, PO .
MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (12) :4241-4257
[22]   Visualization of cytosolic ribosomes on the surface of mitochondria by electron cryo-tomography [J].
Gold, Vicki A. M. ;
Chroscicki, Piotr ;
Bragoszewski, Piotr ;
Chacinska, Agnieszka .
EMBO REPORTS, 2017, 18 (10) :1786-1800
[23]   A stress regulatory network for co-ordinated activation of proteasome expression mediated by yeast heat shock transcription factor [J].
Hahn, JS ;
Neef , DW ;
Thiele, DJ .
MOLECULAR MICROBIOLOGY, 2006, 60 (01) :240-251
[24]   Exploring the functional landscape of gene expression: directed search of large microarray compendia [J].
Hibbs, Matthew A. ;
Hess, David C. ;
Myers, Chad L. ;
Huttenhower, Curtis ;
Li, Kai ;
Troyanskaya, Olga G. .
BIOINFORMATICS, 2007, 23 (20) :2692-2699
[25]   The cytosolic cochaperone Sti1 is relevant for mitochondrial biogenesis and morphology [J].
Hoseini, Hoda ;
Pandey, Saroj ;
Jores, Tobias ;
Schmitt, Anja ;
Franz-Wachtel, Mirita ;
Macek, Boris ;
Buchner, Johannes ;
Dimmer, Kai Stefan ;
Rapaport, Doron .
FEBS JOURNAL, 2016, 283 (18) :3338-3352
[26]  
Huber Wolfgang, 2002, Bioinformatics, V18 Suppl 1, pS96
[27]   Ultrasensitive proteome analysis using paramagnetic bead technology [J].
Hughes, Christopher S. ;
Foehr, Sophia ;
Garfield, David A. ;
Furlong, Eileen E. ;
Steinmetz, Lars M. ;
Krijgsveld, Jeroen .
MOLECULAR SYSTEMS BIOLOGY, 2014, 10 (10)
[28]   A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes [J].
Janke, C ;
Magiera, MM ;
Rathfelder, N ;
Taxis, C ;
Reber, S ;
Maekawa, H ;
Moreno-Borchart, A ;
Doenges, G ;
Schwob, E ;
Schiebel, E ;
Knop, M .
YEAST, 2004, 21 (11) :947-962
[29]  
Khan A, 2018, NUCLEIC ACIDS RES, V46, pD260, DOI 10.1093/nar/gkx1126
[30]   Lipid Biosynthesis Coordinates a Mitochondrial-to-Cytosolic Stress Response [J].
Kim, Hyun-Eui ;
Grant, Ana Rodrigues ;
Simic, Milos S. ;
Kohnz, Rebecca A. ;
Nomura, Daniel K. ;
Durieux, Jenni ;
Riera, Celine E. ;
Sanchez, Melissa ;
Kapernick, Erik ;
Wolff, Suzanne ;
Dillin, Andrew .
CELL, 2016, 166 (06) :1539-+