Mitochondrial protein-induced stress triggers a global adaptive transcriptional programme

被引:142
作者
Boos, Felix [1 ]
Kraemer, Lena [1 ]
Groh, Carina [1 ]
Jung, Ferris [2 ]
Haberkant, Per [3 ]
Stein, Frank [3 ]
Wollweber, Florian [4 ]
Gackstatter, Adrian [1 ]
Zoeller, Eva [1 ]
van der Laan, Martin [4 ]
Savitski, Mikhail M. [3 ,5 ]
Benes, Vladimir [2 ]
Herrmann, Johannes M. [1 ]
机构
[1] Univ Kaiserslautern, Cell Biol, Kaiserslautern, Germany
[2] EMBL Heidelberg, Genom Core Facil, Heidelberg, Germany
[3] EMBL Heidelberg, Prote Core Facil, Heidelberg, Germany
[4] Saarland Univ, Ctr Mol Signaling, PZMS, Med Biochem & Mol Biol, Homburg, Germany
[5] EMBL Heidelberg, Genome Biol Unit, Heidelberg, Germany
关键词
FALSE DISCOVERY RATE; GENE-EXPRESSION; IMPORT; YEAST; PROTEASOME; BINDING; RNA; PCR; REGULATOR; DATABASE;
D O I
10.1038/s41556-019-0294-5
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The cytosolic accumulation of mitochondrial precursors is hazardous to cellular fitness and is associated with a number of diseases. However, it is not observed under physiological conditions. Individual mechanisms that allow cells to avoid cytosolic accumulation of mitochondrial precursors have recently been discovered, but their interplay and regulation remain elusive. Here, we show that cells rapidly launch a global transcriptional programme to restore cellular proteostasis after induction of a 'clogger' protein that reduces the number of available mitochondrial import sites. Cells upregulate the protein folding and proteolytic systems in the cytosol and downregulate both the cytosolic translation machinery and many mitochondrial metabolic enzymes, presumably to relieve the workload of the overstrained mitochondrial import system. We show that this transcriptional remodelling is a combination of a 'wideband' core response regulated by the transcription factors Hsfl and Rpn4 and a unique mitoprotein-induced downregulation of the oxidative phosphorylation components, mediated by an inactivation of the HAP complex.
引用
收藏
页码:442 / +
页数:13
相关论文
共 70 条
[11]   Defining the physiological role of SRP in protein-targeting efficiency and specificity [J].
Costa, Elizabeth A. ;
Subramanian, Kelly ;
Nunnari, Jodi ;
Weissman, Jonathan S. .
SCIENCE, 2018, 359 (6376) :689-692
[12]   Synchronized mitochondrial and cytosolic translation programs [J].
Couvillion, Mary T. ;
Soto, Iliana C. ;
Shipkovenska, Gergana ;
Churchman, L. Stirling .
NATURE, 2016, 533 (7604) :499-+
[13]   A SUBFAMILY OF STRESS PROTEINS FACILITATES TRANSLOCATION OF SECRETORY AND MITOCHONDRIAL PRECURSOR POLYPEPTIDES [J].
DESHAIES, RJ ;
KOCH, BD ;
WERNERWASHBURNE, M ;
CRAIG, EA ;
SCHEKMAN, R .
NATURE, 1988, 332 (6167) :800-805
[14]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[15]   Profiling Ssb-Nascent Chain Interactions Reveals Principles of Hsp70-Assisted Folding [J].
Doering, Kristina ;
Ahmed, Nabeel ;
Riemer, Trine ;
Suresh, Harsha Garadi ;
Vainshtein, Yevhen ;
Habich, Markus ;
Riemer, Jan ;
Mayer, Matthias P. ;
O'Brien, Edward P. ;
Kramer, Guenter ;
Bukau, Bernd .
CELL, 2017, 170 (02) :298-+
[16]   Multiple roles of Tap42 in mediating rapamycin-induced transcriptional changes in yeast [J].
Düvel, K ;
Santhanam, A ;
Garrett, S ;
Schneper, L ;
Broach, JR .
MOLECULAR CELL, 2003, 11 (06) :1467-1478
[17]   BINDING OF A SPECIFIC LIGAND INHIBITS IMPORT OF A PURIFIED PRECURSOR PROTEIN INTO MITOCHONDRIA [J].
EILERS, M ;
SCHATZ, G .
NATURE, 1986, 322 (6076) :228-232
[18]   Mitochondrial dynamics in adaptive and maladaptive cellular stress responses [J].
Eisner, Veronica ;
Picard, Martin ;
Hajnoczky, Gyorgy .
NATURE CELL BIOLOGY, 2018, 20 (07) :755-765
[19]   Complementary whole-genome technologies reveal the cellular response to proteasome inhibition by PS-341 [J].
Fleming, JA ;
Lightcap, ES ;
Sadis, S ;
Thoroddsen, V ;
Bulawa, CE ;
Blackman, RK .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) :1461-1466
[20]   Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry [J].
Franken, Holger ;
Mathieson, Toby ;
Childs, Dorothee ;
Sweetman, Gavain M. A. ;
Werner, Thilo ;
Toegel, Ina ;
Doce, Carola ;
Gade, Stephan ;
Bantscheff, Marcus ;
Drewes, Gerard ;
Reinhard, Friedrich B. M. ;
Huber, Wolfgang ;
Savitski, Mikhail M. .
NATURE PROTOCOLS, 2015, 10 (10) :1567-1593