Effects of point mutations on protein structure are nonexponentially distributed

被引:11
作者
Arodz, Tomasz [1 ,2 ]
Plonka, Przemyslaw M. [2 ]
机构
[1] Virginia Commonwealth Univ, Sch Engn, Dept Comp Sci, Richmond, VA 23284 USA
[2] Jagiellonian Univ, Dept Biophys, Fac Biochem Biophys & Biotechnol, Krakow, Poland
关键词
amino acid substitutions; protein structure change; protein evolution; computational biology; PDB; EVOLUTION; SEQUENCE; SEARCH; STABILITY; DATABASE;
D O I
10.1002/prot.24073
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Inspection of structure changes in proteins borne by altering their sequences brings understanding of physics, functioning and evolution of existing proteins, and helps engineer modified ones. On single amino acid substitutions, the most frequent mutation type, shifts in backbone conformation are typically small, raising doubts if and how such minor modifications could drive evolutionary divergence. Here, we report that the distribution of magnitudes of structure change on such substitutions is heavy-tailed whereas protein structures are robust to most substitutions, changes much larger than average occur with raised odds compared to what would be expected for exponential distribution with the same mean. This nonexponential behavior allows for reconciling the apparent contradiction between the observed conservation of protein structures and the substantial evolutionary plasticity implied in their diversity. The presence of the heavy tail in the distribution promotes structure divergence, facilitating exploration of new functionality, and conformations within folds, as well as exploration of structure space for new folds. Proteins 2012; (c) 2012 Wiley Periodicals, Inc.
引用
收藏
页码:1780 / 1790
页数:11
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