Identification of the novel HLA-B*13:02:13 allele in a Taiwanese haematopoietic stem cell donor and the probable HLA haplotype in association with B*13:02:13

被引:1
作者
Yang, K. L. [1 ,2 ,3 ,4 ]
Lee, S. K. [1 ,2 ,3 ]
Lin, P. Y. [1 ,2 ,3 ]
机构
[1] Buddhist Compass Relief Tzu Chi Fdn, Immunogenet Lab, Hualien 970, Taiwan
[2] Buddhist Compass Relief Tzu Chi Fdn, Buddhist Tzu Chi Stem Cells Ctr, Cord Blood Bank, Hualien 970, Taiwan
[3] Buddhist Compass Relief Tzu Chi Fdn, Buddhist Tzu Chi Gen Hosp, Marrow Donor Registry, Hualien 970, Taiwan
[4] Buddhist Tzu Chi Univ, Buddhist Compass Relief Tzu Chi Fdn, Dept Med Biotechnol, Hualien, Taiwan
关键词
LEUKOCYTE ANTIGEN-A;
D O I
10.1111/j.1744-313X.2012.01154.x
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Using sequence-based typing method, we found a new HLA-B*13:02 variant, B*13:02:13, in a Taiwanese haematopoietic stem cell donor. The DNA sequence of B*13:02:13 is identical to the sequence of B*13:02:01 in exons 2 and 3 except the nucleotide at position 588 where G is replaced by T (codon 172; CTGCTT). The DNA sequence variation did not alter the amino acid sequence of B*13:02:01. The generation of B*13:02:13 is thought to derive from B*13:02:01 as a result of a silence mutation. The probable HLA-A, HLA-B and HLA-DRB1 haplotype in association with B*13:02:1 may be deduced as HLA-A*24-B*13:02:13-DRB1*07:01 or HLA-A*02-B*13:02:13-DRB1*07:01. The discovery of B*13:02:13 furthers the polymorphism of HLA-B*13 and HLA-B*13:02.
引用
收藏
页码:241 / 242
页数:2
相关论文
共 10 条
[1]   Discovery of HLA-B*480102 in Taiwanese [J].
Chen, M. J. ;
Chu, C. C. ;
Shyr, M. H. ;
Lin, P. Y. ;
Yang, K. L. .
INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2008, 35 (01) :15-18
[2]   Sequence-based typing of a novel HLA-DRB1*04 allele, DRB1*0461, in a Taiwanese volunteer marrow donor [J].
Chen, M. J. ;
Chu, C. C. ;
Lin, P. Y. ;
Yang, K. L. .
INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2007, 34 (04) :269-272
[3]   A novel HLA-B allele, B*5214, detected in a Taiwanese volunteer bone marrow donor using a sequence-based typing method [J].
Chen, M. J. ;
Chu, C. C. ;
Shyr, M. H. ;
Lin, C. L. ;
Lin, P. Y. ;
Yang, K. L. .
INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2010, 37 (01) :39-41
[4]   Detection of a novel HLA-B27 allele, B*2740, in Taiwanese volunteer bone marrow donors by sequence-based typing: curiosity rewarded [J].
Chen, M. J. ;
Yang, T. C. ;
Chu, C. C. ;
Shyr, M. H. ;
Lin, C. L. ;
Lin, P. Y. ;
Yang, K. L. .
INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2009, 36 (04) :207-211
[5]   Distributions of human leukocyte antigen-A, -B, and-DRB1 alleles and haplotypes based on 46,915 Taiwanese donors [J].
Lai, Meng-Jiun ;
Wen, Shu-Hui ;
Lin, Ya-Hui ;
Shyr, Ming-Huang ;
Lin, Py-Yu ;
Yang, Kuo-Liang .
HUMAN IMMUNOLOGY, 2010, 71 (08) :777-782
[6]   Nomenclature for factors of the HLA system, 2010 [J].
Marsh, S. G. E. ;
Albert, E. D. ;
Bodmer, W. F. ;
Bontrop, R. E. ;
Dupont, B. ;
Erlich, H. A. ;
Fernandez-Vina, M. ;
Geraghty, D. E. ;
Holdsworth, R. ;
Hurley, C. K. ;
Lau, M. ;
Lee, K. W. ;
Mach, B. ;
Maiers, M. ;
Mayr, W. R. ;
Mueller, C. R. ;
Parham, P. ;
Petersdorf, E. W. ;
Sasazuki, T. ;
Strominger, J. L. ;
Svejgaard, A. ;
Terasaki, P. I. ;
Tiercy, J. M. ;
Trowsdale, J. .
TISSUE ANTIGENS, 2010, 75 (04) :291-455
[7]   The IMGT/HLA database [J].
Robinson, James ;
Mistry, Kavita ;
McWilliam, Hamish ;
Lopez, Rodrigo ;
Parham, Peter ;
Marsh, Steven G. E. .
NUCLEIC ACIDS RESEARCH, 2011, 39 :D1171-D1176
[8]   Human leukocyte antigen-A, -B, and-DRB1 haplotypes of cord blood units in the Tzu Chi Taiwan Cord Blood Bank [J].
Wen, Shu-Hui ;
Lai, Meng-Jiun ;
Yang, Kuo-Liang .
HUMAN IMMUNOLOGY, 2008, 69 (07) :430-436
[9]   Determination of HLA-A, -B and -DRB1 haplotypes based on allelic homozygosity data in selected bone marrow donors of the Taiwanese marrow donor registry [J].
Yang, K. L. ;
Lin, P. Y. .
INTERNATIONAL JOURNAL OF IMMUNOGENETICS, 2007, 34 (05) :385-392
[10]   High-resolution human leukocyte antigen (HLA) haplotypes and linkage disequilibrium of HLA-B and -C and HLA-DRB1 and-DQB1 alleles in a Taiwanese population [J].
Yang, Kuo-Liang ;
Chen, Shee-Ping ;
Shyr, Ming-Huang ;
Lin, Py-Yu .
HUMAN IMMUNOLOGY, 2009, 70 (04) :269-276