Next-generation sequencing in the clinic

被引:30
作者
Park, Jason Y. [1 ,2 ,3 ]
Kricka, Larry J. [4 ]
Fortina, Paolo [5 ]
机构
[1] Univ Texas SW Med Ctr Dallas, Dept Pathol, Dallas, TX 75390 USA
[2] Childrens Med Ctr, Dallas, TX 75235 USA
[3] Univ Texas SW Med Ctr Dallas, Eugene McDermott Ctr Human Growth & Dev, Dallas, TX 75390 USA
[4] Univ Penn, Med Ctr, Dept Pathol & Lab Med, Philadelphia, PA 19104 USA
[5] Thomas Jefferson Univ, Jefferson Med Coll, Kimmel Canc Ctr, Dept Canc Biol,Canc Genom Lab, Philadelphia, PA 19107 USA
关键词
OFF-LABEL USE; CANCER;
D O I
10.1038/nbt.2743
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Pools of cell lines carrying a variety of known mutations are used to validate the performance of a cancer diagnostic test based on next-generation sequencing.
引用
收藏
页码:990 / 992
页数:3
相关论文
共 10 条
[1]   Effect of Oxaliplatin, Fluorouracil, and Leucovorin With or Without Cetuximab on Survival Among Patients With Resected Stage III Colon Cancer A Randomized Trial [J].
Alberts, Steven R. ;
Sargent, Daniel J. ;
Nair, Suresh ;
Mahoney, Michelle R. ;
Mooney, Margaret ;
Thibodeau, Stephen N. ;
Smyrk, Thomas C. ;
Sinicrope, Frank A. ;
Chan, Emily ;
Gill, Sharlene ;
Kahlenberg, Morton S. ;
Shields, Anthony F. ;
Quesenberry, James T. ;
Webb, Thomas A. ;
Farr, Gist H., Jr. ;
Pockaj, Barbara A. ;
Grothey, Axel ;
Goldberg, Richard M. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2012, 307 (13) :1383-1393
[2]   Activating HER2 Mutations in HER2 Gene Amplification Negative Breast Cancer [J].
Bose, Ron ;
Kavuri, Shyam M. ;
Searleman, Adam C. ;
Shen, Wei ;
Shen, Dong ;
Koboldt, Daniel C. ;
Monsey, John ;
Goel, Nicholas ;
Aronson, Adam B. ;
Li, Shunqiang ;
Ma, Cynthia X. ;
Ding, Li ;
Mardis, Elaine R. ;
Ellis, Matthew J. .
CANCER DISCOVERY, 2013, 3 (02) :224-237
[3]  
CAP Laboratory Accreditation Program, MOL PATH CHECKL
[4]   Prevalence of Off-Label Use and Spending in 2010 Among Patent-Protected Chemotherapies in a Population-Based Cohort of Medical Oncologists [J].
Conti, Rena M. ;
Bernstein, Arielle C. ;
Villaflor, Victoria M. ;
Schilsky, Richard L. ;
Rosenthal, Meredith B. ;
Bach, Peter B. .
JOURNAL OF CLINICAL ONCOLOGY, 2013, 31 (09) :1134-1139
[5]   Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing [J].
Frampton, Garrett M. ;
Fichtenholtz, Alex ;
Otto, Geoff A. ;
Wang, Kai ;
Downing, Sean R. ;
He, Jie ;
Schnall-Levin, Michael ;
White, Jared ;
Sanford, Eric M. ;
An, Peter ;
Sun, James ;
Juhn, Frank ;
Brennan, Kristina ;
Iwanik, Kiel ;
Maillet, Ashley ;
Buell, Jamie ;
White, Emily ;
Zhao, Mandy ;
Balasubramanian, Sohail ;
Terzic, Selmira ;
Richards, Tina ;
Banning, Vera ;
Garcia, Lazaro ;
Mahoney, Kristen ;
Zwirko, Zac ;
Donahue, Amy ;
Beltran, Himisha ;
Mosquera, Juan Miguel ;
Rubin, Mark A. ;
Dogan, Snjezana ;
Hedvat, Cyrus V. ;
Berger, Michael F. ;
Pusztai, Lajos ;
Lechner, Matthias ;
Boshoff, Chris ;
Jarosz, Mirna ;
Vietz, Christine ;
Parker, Alex ;
Miller, Vincent A. ;
Ross, Jeffrey S. ;
Curran, John ;
Cronin, Maureen T. ;
Stephens, Philip J. ;
Lipson, Doron ;
Yelensky, Roman .
NATURE BIOTECHNOLOGY, 2013, 31 (11) :1023-+
[6]  
Garber K., 2011, JNCI-J NATL CANCER I, V03, P84
[7]   Assuring the quality of next-generation sequencing in clinical laboratory practice [J].
Gargis, Amy S. ;
Kalman, Lisa ;
Berry, Meredith W. ;
Bick, David P. ;
Dimmock, David P. ;
Hambuch, Tina ;
Lu, Fei ;
Lyon, Elaine ;
Voelkerding, Karl V. ;
Zehnbauer, Barbara A. ;
Agarwala, Richa ;
Bennett, Sarah F. ;
Chen, Bin ;
Chin, Ephrem L. H. ;
Compton, John G. ;
Das, Soma ;
Farkas, Daniel H. ;
Ferber, Matthew J. ;
Funke, Birgit H. ;
Furtado, Manohar R. ;
Ganova-Raeva, Lilia M. ;
Geigenmueller, Ute ;
Gunselman, Sandra J. ;
Hegde, Madhuri R. ;
Johnson, Philip L. F. ;
Kasarskis, Andrew ;
Kulkarni, Shashikant ;
Lenk, Thomas ;
Liu, C. S. Jonathan ;
Manion, Megan ;
Manolio, Teri A. ;
Mardis, Elaine R. ;
Merker, Jason D. ;
Rajeevan, Mangalathu S. ;
Reese, Martin G. ;
Rehm, Heidi L. ;
Simen, Birgitte B. ;
Yeakley, Joanne M. ;
Zook, Justin M. ;
Lubin, Ira M. .
NATURE BIOTECHNOLOGY, 2012, 30 (11) :1033-1036
[8]   Off-Label Use of Cancer Drugs: A Benchmark Is Established [J].
Krzyzanowska, Monika K. .
JOURNAL OF CLINICAL ONCOLOGY, 2013, 31 (09) :1125-1127
[9]   ACMG clinical laboratory standards for next-generation sequencing [J].
Rehm, Heidi L. ;
Bale, Sherri J. ;
Bayrak-Toydemir, Pinar ;
Berg, Jonathan S. ;
Brown, Kerry K. ;
Deignan, Joshua L. ;
Friez, Michael J. ;
Funke, Birgit H. ;
Hegde, Madhuri R. ;
Lyon, Elaine .
GENETICS IN MEDICINE, 2013, 15 (09) :733-747
[10]   Implementing personalized cancer genomics in clinical trials [J].
Simon, Richard ;
Roychowdhury, Sameek .
NATURE REVIEWS DRUG DISCOVERY, 2013, 12 (05) :359-370