Calculation of coordinates from molecular geometric parameters and the concept of a geometric calculator

被引:8
作者
Essen, H [1 ]
Svensson, M [1 ]
机构
[1] EMORY UNIV,DEPT CHEM,ATLANTA,GA 30322
来源
COMPUTERS & CHEMISTRY | 1996年 / 20卷 / 04期
关键词
D O I
10.1016/0097-8485(96)00007-1
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Three different geometric parameters, distance r(i,j), angle theta(i,j,k), and dihedral (or torsion) angle phi(i,j,k,l), are commonly used to specify the shape of a molecule. Given Cartesian coordinates it is simple to calculate such parameters. The, non-trivial, inverse problem of finding coordinates when given such parameters is considered here. When a triple of such geometric parameters is given to specify the position of an atom, n, relative to reference atoms i,j,k,..., with known positions, five qualitatively different cases arise: r(n,i), theta(n,i,j), phi(n,i,j,k), theta(j,n,i) and phi(k,n,i,j). Each such geometric coordinate specifies n to lie on a certain type of surface. To calculate its position one must find the point of intersection of three such surfaces. A program, EVCLID, that can perform these calculations is integrated with an interactive set of routines that constitute a geometric calculator and editor. It works on (three-dimensional) points and has a number of input, display and output options. It can translate, rotate, reflect, invert and scale as well as edit the point set or subsets. Copyright (C) 1996 Elsevier Science Ltd
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页码:389 / 395
页数:7
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