Microscopic description of acid-base equilibrium

被引:36
作者
Grifoni, Emanuele [1 ,2 ]
Piccini, GiovanniMaria [1 ,2 ]
Parrinello, Michele [1 ,2 ,3 ]
机构
[1] Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Ticino, Switzerland
[2] Univ Svizzera Italiana, Inst Computat Sci, CH-6900 Lugano, Ticino, Switzerland
[3] Italian Inst Technol, I-16163 Genoa, Italy
关键词
acid-base; metadynamics; collective variables; enhanced sampling; DENSITY-FUNCTIONAL-THEORY; PK(A) VALUES; PREDICTION;
D O I
10.1073/pnas.1819771116
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Acid-base reactions are ubiquitous in nature. Understanding their mechanisms is crucial in many fields, from biochemistry to industrial catalysis. Unfortunately, experiments give only limited information without much insight into the molecular behavior. Atomistic simulations could complement experiments and shed precious light on microscopic mechanisms. The large free-energy barriers connected to proton dissociation, however, make the use of enhanced sampling methods mandatory. Here we perform an ab initio molecular dynamics (MD) simulation and enhance sampling with the help of metadynamics. This has been made possible by the introduction of descriptors or collective variables (CVs) that are based on a conceptually different outlook on acid-base equilibria. We test successfully our approach on three different aqueous solutions of acetic acid, ammonia, and bicarbonate. These are representative of acid, basic, and amphoteric behavior.
引用
收藏
页码:4054 / 4057
页数:4
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