Non-contiguous finished genome sequence and description of Anaerococcus pacaensis sp nov., a new species of anaerobic bacterium

被引:4
作者
Pagnier, Isabelle [1 ]
Croce, Olivier [1 ]
Robert, Catherine [1 ]
Raoult, Didier [1 ]
La Scola, Bernard [1 ]
机构
[1] Aix Marseille Univ, Fac Med, Unite Rech Malad Infect & Trop Emergentes, Marseille, France
关键词
Anaerococcus pacaensis; genome; GEN; NOV; PROPOSAL; TOOL;
D O I
10.4056/sigs.4177252
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Anaerococcus pacaensis strain 9403502(T), is the type strain of Anaerococcus pacaensis sp. nov., a new species within a new genus Anaerococcus. This strain, whose genome is described here, was isolated from a blood sample. A. pacaensis strain 9403502(T) is an obligate anaerobic Gram-positive coccus. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2.36 Mbp long genome exhibits a G+C content of 35.05% and contains 2,186 protein-coding and 72 RNA genes, including 3 rRNA genes.
引用
收藏
页码:548 / 560
页数:13
相关论文
共 49 条
[1]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[2]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
[3]  
Benson DA, 2013, NUCLEIC ACIDS RES, V41, pD36, DOI [10.1093/nar/gkn723, 10.1093/nar/gkp1024, 10.1093/nar/gkw1070, 10.1093/nar/gkr1202, 10.1093/nar/gkx1094, 10.1093/nar/gkl986, 10.1093/nar/gkq1079, 10.1093/nar/gks1195, 10.1093/nar/gkg057]
[4]   Toward almost closed genomes with GapFiller [J].
Boetzer, Marten ;
Pirovano, Walter .
GENOME BIOLOGY, 2012, 13 (06)
[5]   BLAST plus : architecture and applications [J].
Camacho, Christiam ;
Coulouris, George ;
Avagyan, Vahram ;
Ma, Ning ;
Papadopoulos, Jason ;
Bealer, Kevin ;
Madden, Thomas L. .
BMC BIOINFORMATICS, 2009, 10
[6]  
Euzeby J., 2010, INT J SYST EVOL MICR, V60, P469
[7]   Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov and Gallicola gen. nov for members of the genus Peptostreptococcus [J].
Ezaki, T ;
Kawamura, Y ;
Li, N ;
Li, ZY ;
Zhao, LC ;
Shu, SE .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 :1521-1528
[8]   STUDIES ON THE ANAEROBIC MICROCOCCI .1. TAXONOMIC CONSIDERATIONS [J].
FOUBERT, EL ;
DOUGLAS, HC .
JOURNAL OF BACTERIOLOGY, 1948, 56 (01) :25-34
[9]   Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences [J].
Gao, Song ;
Sung, Wing-Kin ;
Nagarajan, Niranjan .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2011, 18 (11) :1681-1691
[10]  
Garrity G.M., 2001, BERGEYS MAN SYST BAC, V2nd, P119, DOI [10.1007/978-0-387-21609-6_15, DOI 10.1007/978-0-387-21609-6_15]