Modeling quantitative structure-property relationships in calculated reaction pathways using a new 3D quantum topological representation

被引:15
作者
Alsberg, BK [1 ]
Marchand-Geneste, N [1 ]
King, RD [1 ]
机构
[1] Univ Wales, Dept Comp Sci, Aberystwyth SY23 3DB, Ceredigion, Wales
关键词
structure representation using quantum topology (StruQT); intrinsic reaction coordinate (IRC); atoms in molecules (AIM); Bader theory; multivariate analysis; principal components analysis (PCA); partial least squares (PLS) regression; Markovnikov reaction; electrophilic addition;
D O I
10.1016/S0003-2670(01)00984-9
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
The present article demonstrates how the recently developed structure representation using quantum topology (StruQT) approach enables easier interpretation and discovery of 3D quantitative structure-property relationships (QSPR) in calculated reaction pathways from ab initio methods. StruQT is based on the: atoms in molecules (AIM) theory where the use of critical points in the electron density distribution is of central importance. The reasons for using AIM theory are: (a) critical points provide a finite and highly compressed representation of a continuous 3D scalar field, (b) it is firmly rooted in quantum mechanics and (c) it provides a link between traditional chemical concepts and quantum mechanics which is crucial for the interpretation of QSPR models. (C) 2001 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:3 / 13
页数:11
相关论文
共 24 条
[1]  
Alsberg BK, 1996, J COMPUT CHEM, V17, P1197, DOI 10.1002/(SICI)1096-987X(19960730)17:10<1197::AID-JCC2>3.3.CO
[2]  
2-K
[3]   A new 3D molecular structure representation using quantum topology with application to structure-property relationships [J].
Alsberg, BK ;
Marchand-Geneste, N ;
King, RD .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2000, 54 (02) :75-91
[4]  
Bader R. F. W., 1994, ATOMS MOL QUANTUM TH
[5]   COMPARATIVE MOLECULAR-FIELD ANALYSIS (COMFA) .1. EFFECT OF SHAPE ON BINDING OF STEROIDS TO CARRIER PROTEINS [J].
CRAMER, RD ;
PATTERSON, DE ;
BUNCE, JD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1988, 110 (18) :5959-5967
[6]  
Frisch M.J., 2016, Gaussian 16 Revision C. 01. 2016, V16, P01
[7]   THE PATH OF CHEMICAL-REACTIONS - THE IRC APPROACH [J].
FUKUI, K .
ACCOUNTS OF CHEMICAL RESEARCH, 1981, 14 (12) :363-368
[8]   IMPROVED ALGORITHMS FOR REACTION-PATH FOLLOWING - HIGHER-ORDER IMPLICIT ALGORITHMS [J].
GONZALEZ, C ;
SCHLEGEL, HB .
JOURNAL OF CHEMICAL PHYSICS, 1991, 95 (08) :5853-5860
[9]   REACTION-PATH FOLLOWING IN MASS-WEIGHTED INTERNAL COORDINATES [J].
GONZALEZ, C ;
SCHLEGEL, HB .
JOURNAL OF PHYSICAL CHEMISTRY, 1990, 94 (14) :5523-5527
[10]   Topological analysis of the molecular electrostatic potential [J].
Leboeuf, M ;
Köster, AM ;
Jug, K ;
Salahub, DR .
JOURNAL OF CHEMICAL PHYSICS, 1999, 111 (11) :4893-4905