Conformational analysis on segments of charged polysaccharides. The case of hyaluronic acid dimer and chondrosine

被引:9
作者
Miertus, S
Bella, J
Toffanin, R
Matulova, M
Paoletti, S
机构
[1] UNIDO, ICS, INT INST CHEM, AREA RIC, I-34012 TRIESTE, ITALY
[2] UNIV TRIESTE, DIPARTIMENTO BIOCHIM BIOFIS & CHIM MACROMOL, I-34127 TRIESTE, ITALY
[3] INST DRUG RES, MODRA, SLOVAKIA
[4] SLOVAK ACAD SCI, INST CHEM, BRATISLAVA 84238, SLOVAKIA
来源
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM | 1997年 / 395卷
关键词
charged polysaccharides; chondrosine; conformational analysis; hyaluronic acid dimer;
D O I
10.1016/S0166-1280(96)04867-1
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The conformations of two differently charged carbohydrate systems, namely hyaluronic acid dimer and chondrosine, were studied by various methods of molecular modelling, The effects of protonation, ionization, solvent polarity and the presence of counter-ions on the conformational behaviour were evaluated. Two different generic force fields (CVFF and DII) and different methodologies (grid search, Monte Carlo, quenched molecular dynamics) were adopted for the search of stable conformers and conformational space. Data obtained from molecular modelling were compared with those derived from one-dimensional nuclear Overhauser spectroscopy. (NOESY) experiments. (C) 1997 Elsevier Science B.V.
引用
收藏
页码:437 / 449
页数:13
相关论文
共 20 条
[1]  
*BIOS TECHN, 1990, INS 2
[2]  
*CARB INT, 1994, P 3 INT SAT S CONF A
[3]   STRUCTURE AND ENERGETICS OF LIGAND-BINDING TO PROTEINS - ESCHERICHIA-COLI DIHYDROFOLATE REDUCTASE TRIMETHOPRIM, A DRUG-RECEPTOR SYSTEM [J].
DAUBEROSGUTHORPE, P ;
ROBERTS, VA ;
OSGUTHORPE, DJ ;
WOLFF, J ;
GENEST, M ;
HAGLER, AT .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1988, 4 (01) :31-47
[4]  
FRENCH AD, 1990, ACS S SERIES, V430
[5]   CONFORMATIONAL-ANALYSIS AND MOLECULAR-DYNAMICS SIMULATION OF CELLOBIOSE AND LARGER CELLOOLIGOMERS [J].
HARDY, BJ ;
SARKO, A .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1993, 14 (07) :831-847
[6]   MOLECULAR-DYNAMICS SIMULATION OF CELLOBIOSE IN WATER [J].
HARDY, BJ ;
SARKO, A .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1993, 14 (07) :848-857
[7]   THE SOLUTION CONFORMATION OF HYALURONAN - A COMBINED NMR AND MOLECULAR-DYNAMICS STUDY [J].
HOLMBECK, SMA ;
PETILLO, PA ;
LERNER, LE .
BIOCHEMISTRY, 1994, 33 (47) :14246-14255
[8]   TRANSFORMATION OF HOMONUCLEAR TWO-DIMENSIONAL NMR TECHNIQUES INTO ONE-DIMENSIONAL TECHNIQUES USING GAUSSIAN PULSES [J].
KESSLER, H ;
OSCHKINAT, H ;
GRIESINGER, C ;
BERMEL, W .
JOURNAL OF MAGNETIC RESONANCE, 1986, 70 (01) :106-133
[9]   AN IMPROVED METHOD FOR THE DETERMINATION OF CROSS-RELAXATION RATES FROM NOE DATA [J].
MACURA, S ;
FARMER, BT ;
BROWN, LR .
JOURNAL OF MAGNETIC RESONANCE, 1986, 70 (03) :493-499
[10]   DREIDING - A GENERIC FORCE-FIELD FOR MOLECULAR SIMULATIONS [J].
MAYO, SL ;
OLAFSON, BD ;
GODDARD, WA .
JOURNAL OF PHYSICAL CHEMISTRY, 1990, 94 (26) :8897-8909