Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs
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作者:
Kim, Kwondo
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Seoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
C&K Genom, C-1008,H Businesspk,26 Beobwon Ro 9 Gil, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Kim, Kwondo
[1
,2
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Yoo, DongAhn
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Seoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
C&K Genom, C-1008,H Businesspk,26 Beobwon Ro 9 Gil, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Yoo, DongAhn
[1
,2
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Lee, Hee Seung
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Lee, Hee Seung
[3
]
Lee, Kyong Joo
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Lee, Kyong Joo
[3
]
Park, Soo Been
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Park, Soo Been
[3
]
Kim, Chanyang
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Kim, Chanyang
[3
]
Jo, Jung Hyun
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South Korea
Hallym Univ, Hangang Sacred Heart Hosp, Dept Internal Med, Div Gastroenterol,Coll Med, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Jo, Jung Hyun
[3
,4
]
Jung, Dawoon E.
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Yonsei Univ, Coll Med, Dept Internal Med, Inst Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Jung, Dawoon E.
[5
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Song, Si Young
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Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South Korea
Yonsei Univ, Coll Med, Dept Internal Med, Inst Gastroenterol, 50-1 Yonsei Ro, Seoul, South KoreaSeoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
Song, Si Young
[3
,5
]
机构:
[1] Seoul Natl Univ, Interdisciplinary Program Bioinformat, Seoul, South Korea
[2] C&K Genom, C-1008,H Businesspk,26 Beobwon Ro 9 Gil, Seoul, South Korea
[3] Yonsei Univ, Coll Med, Dept Internal Med, Div Gastroenterol, 50-1 Yonsei Ro, Seoul, South Korea
[4] Hallym Univ, Hangang Sacred Heart Hosp, Dept Internal Med, Div Gastroenterol,Coll Med, Seoul, South Korea
[5] Yonsei Univ, Coll Med, Dept Internal Med, Inst Gastroenterol, 50-1 Yonsei Ro, Seoul, South Korea
BackgroundPancreatic and biliary tract cancer (PC and BTC, respectively) are difficult to diagnose because of their clinical characteristics; however, recent studies suggest that serum microRNAs (miRNAs) might be the key to developing more efficient diagnostic methods for these cancers.MethodsWe analysed the genome-wide expression of serum miRNAs in PC and BTC patients to identify novel biomarker candidates using high-throughput sequencing and experimentally validated miRNAs on clinical samples.ResultsStatistical and classification analysis of the serum miRNA-expression profiles of 55 patient samples showed distinguishable patterns between cancer patients and healthy controls; however, we were unable to distinguish the two cancers. We found that three of the highest performing miRNAs were capable of distinguishing cancer patients from controls, with an accuracy of 92.7%. Additionally, dysregulation of these three cancer-specific miRNAs was demonstrated in an independent sample group by quantitative reverse transcription polymerase chain reaction.ConclusionsThese results suggested three candidate serum miRNAs (mir-744-5p, mir-409-3p, and mir-128-3p) as potential biomarkers for PC and BTC diagnosis.
机构:
Azienda Ospedaliera Padova, Dipartimento Med Lab, Via Giustiniani 2, I-35128 Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Fogar, Paola
Greco, Eliana
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Azienda Ospedaliera Padova, Dipartimento Med Lab, Via Giustiniani 2, I-35128 Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Greco, Eliana
Fadi, Elisa
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Univ Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Fadi, Elisa
Bozzato, Dania
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Univ Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Bozzato, Dania
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Moz, Stefania
Navaglia, Filippo
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Azienda Ospedaliera Padova, Dipartimento Med Lab, Via Giustiniani 2, I-35128 Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Navaglia, Filippo
Zambon, Carlo Federico
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Azienda Ospedaliera Padova, Dipartimento Med Lab, Via Giustiniani 2, I-35128 Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Zambon, Carlo Federico
Seraglia, Roberta
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ISTM, Ctr Nazl Ric, Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Seraglia, Roberta
Pelloso, Michela
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Univ Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Pelloso, Michela
Rossi, Elisa
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Univ Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy
Rossi, Elisa
Basso, Daniela
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Azienda Ospedaliera Padova, Dipartimento Med Lab, Via Giustiniani 2, I-35128 Padua, ItalyUniv Padua, Dipartimento Sci Med Diagnostiche & Terapie Speci, Padua, Italy