Novel Approach to Excited-State Calculations of Large Molecules Based on Divide-and-Conquer Method: Application to Photoactive Yellow Protein

被引:37
作者
Yoshikawa, Takeshi [1 ]
Kobayashi, Masato [3 ]
Fujii, Atsuhiko [1 ]
Nakai, Hiromi [1 ,2 ,4 ,5 ]
机构
[1] Waseda Univ, Dept Chem & Biochem, Sch Adv Sci & Engn, Tokyo 1698555, Japan
[2] Waseda Univ, Res Inst Sci & Engn, Tokyo 1698555, Japan
[3] Waseda Univ, Waseda Inst Adv Study, Tokyo 1698050, Japan
[4] Japan Sci & Technol Agcy, CREST, Kawaguchi, Saitama 3320012, Japan
[5] Kyoto Univ, ESICB, Nishigyo Ku, Kyoto 6158520, Japan
关键词
OPEN-SHELL SYSTEMS; ELECTRONIC-STRUCTURE CALCULATIONS; COLOR-TUNING MECHANISM; CLUSTER-EXPANSION; ORBITAL METHODS; WAVE-FUNCTION; BASIS-SETS; DENSITY; IMPLEMENTATION; EXCITATION;
D O I
10.1021/jp401819d
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this study, the divide-and-conquer (DC) method is extended to configuration-interaction singles, time-dependent density functional, and symmetry-adapted cluster configuration interaction (SACCI) theories for enabling excited-state calculations of large systems. In DC-based excited-state theories, one subsystem is selected as the excitation subsystem and analyzed via excited-state calculations. Test calculations for formaldehyde in water and a conjugated aldehyde demonstrate the high accuracy and effectiveness of these methods. To demonstrate the efficiency of the method, we calculated the pi-pi* excited state of photoactive yellow protein (PYP). The numerical applications to PYP confirm that the DC-SACCI method significantly accelerates the excited-state calculations while maintaining high accuracy.
引用
收藏
页码:5565 / 5573
页数:9
相关论文
共 62 条
[1]   Is the divide-and-conquer Hartree-Fock method valid for calculations of delocalized systems? [J].
Akama, Tomoko ;
Fujii, Atsuhiko ;
Kobayashi, Masato ;
Nakai, Hiromi .
MOLECULAR PHYSICS, 2007, 105 (19-22) :2799-2804
[2]   Implementation of divide-and-conquer method including Hartree-Fock exchange interaction [J].
Akama, Tomoko ;
Kobayashi, Masato ;
Nakai, Hiromi .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2007, 28 (12) :2003-2012
[3]   Electronic Temperature in Divide-and-Conquer Electronic Structure Calculation Revisited: Assessment and Improvement of Self-Consistent Field Convergence [J].
Akama, Tomoko ;
Kobayashi, Masato ;
Nakai, Hiromi .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2009, 109 (12) :2706-2713
[4]  
[Anonymous], RECENT ADV DENSITY 1
[5]  
[Anonymous], J CHEM PHYS
[6]  
[Anonymous], J CHEM PHYS
[7]  
[Anonymous], HIGHER EXCITED STATE
[8]  
[Anonymous], J CHEM PHYS
[9]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[10]   Time-dependent density functional theory based upon the fragment molecular orbital method [J].
Chiba, Mahito ;
Fedorov, Dmitri G. ;
Kitaura, Kazuo .
JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (10)