The pangenome of an agronomically important crop plant Brassica oleracea

被引：337

作者：

Golicz, Agnieszka A. ^{[1
]}

Bayer, Philipp E. ^{[2
]}

Barker, Guy C. ^{[3
]}

Edger, Patrick P. ^{[4
]}

Kim, HyeRan ^{[5
]}

Martinez, Paula A. ^{[1
]}

Chan, Chon Kit Kenneth ^{[2
]}

Severn-Ellis, Anita ^{[2
]}

McCombie, W. Richard ^{[6
]}

Parkin, Isobel A. P. ^{[7
]}

Paterson, Andrew H. ^{[8
,10
]}

Pires, J. Chris ^{[9
]}

Sharpe, Andrew G.

Tang, Haibao ^{[11
]}

Teakle, Graham R. ^{[3
]}

Town, Christopher D. ^{[12
]}

Batley, Jacqueline ^{[2
]}

Edwards, David ^{[2
]}

机构：

[1] Univ Queensland, Sch Agr & Food Sci, Brisbane, Qld 4072, Australia

[2] Univ Western Australia, Sch Plant Biol, 35 Stirling Highway, Crawley, WA 6009, Australia

[3] Univ Warwick, Sch Life Sci, Warwick CV35 9EF, England

[4] Michigan State Univ, Dept Hort, E Lansing, MI 48823 USA

[5] Korea Res Inst Biosci & Biotechnol, 125 Gwahak Ro, Daejeon 34141, South Korea

[6] Cold Spring Harbor Lab, 1 Bungtown Rd, Cold Spring Harbor, NY 11724 USA

[7] Agr & Agri Food Canada, 107 Sci Pl, Saskatoon, SK S7N 0X2, Canada

[8] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA

[9] Univ Missouri, Div Biol Sci, Bond Life Sci Ctr, Columbia, MO 65211 USA

[10] Natl Res Council Canada, 110 Gymnasium Pl, Saskatoon, SK S7N 0W9, Canada

[11] Fujian Agr & Forestry Univ, Ctr Genom & Biotechnol, Fujian Prov Key Lab Haixia Appl Plant Syst Biol, HIST, Fuzhou 350002, Fujian, Peoples R China

[12] J Craig Venter Inst, 9704 Med Ctr Dr, Rockville, MD 20850 USA

来源：

NATURE COMMUNICATIONS | 2016年 / 7卷

基金：

澳大利亚研究理事会; 美国国家科学基金会; 英国生物技术与生命科学研究理事会;

关键词：

FLOWERING-LOCUS-C; ARABIDOPSIS-THALIANA; WHOLE-GENOME; GLUCOSINOLATE BIOSYNTHESIS; GENE DUPLICATION; FLC HOMOLOGS; PAN-GENOME; ARMS-RACE; TIME; ANNOTATION;

D O I：

10.1038/ncomms13390

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

There is an increasing awareness that as a result of structural variation, a reference sequence representing a genome of a single individual is unable to capture all of the gene repertoire found in the species. A large number of genes affected by presence/absence and copy number variation suggest that it may contribute to phenotypic and agronomic trait diversity. Here we show by analysis of the Brassica oleracea pangenome that nearly 20% of genes are affected by presence/absence variation. Several genes displaying presence/absence variation are annotated with functions related to major agronomic traits, including disease resistance, flowering time, glucosinolate metabolism and vitamin biosynthesis.

引用

页数：8

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