Imidazolium ionic liquids as effective antiseptics and disinfectants against drug resistant S. aureus: In silico and in vitro studies

被引:20
作者
Hodyna, Diana [1 ]
Kovalishyn, Vasyl [1 ]
Semenyuta, Ivan [1 ]
Blagodatnyi, Volodymyr [2 ]
Rogalsky, Sergiy [3 ]
Metelytsia, Larisa [1 ]
机构
[1] NAS Ukraine, Inst Bioorgan Chem & Petrochem, Dept Med & Biol Res, UA-02160 Kiev 94, Ukraine
[2] Shupyk Natl Med Acad Postgrad Educ, Dept Microbiol & Epidemiol, UA-04112 Kiev, Ukraine
[3] NAS Ukraine, Inst Bioorgan Chem & Petrochem, Lab Modificat Polymers, UA-02160 Kiev, Ukraine
关键词
Imidazolium ionic liquids; QSAR models; OCHEM; Molecular docking; Staphylococcus aureus; ANTIMICROBIAL ACTIVITIES; STAPHYLOCOCCUS-AUREUS; NEURAL-NETWORK; ANTIBACTERIAL ACTIVITY; DERIVATIVES; TOXICITY; BIODEGRADATION; SUSCEPTIBILITY; INFECTIONS; PYRIDINIUM;
D O I
10.1016/j.compbiolchem.2018.01.012
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
This paper describes Quantitative Structure-Activity Relationships (QSAR) studies, molecular docking and in vitro antibacterial activity of several potent imidazolium-based ionic liquids (ILs) against S. aureus ATCC 25923 and its clinical isolate. Small set of 131 ILs was collected from the literature and uploaded in the OCHEM database. QSAR methodologies used Associative Neural Networks and Random Forests (WEKA-RF) methods. The predictive ability of the models was tested through cross-validation, giving cross-validated coefficients q(2) = 0.82-0.87 for regression models and overall prediction accuracies of 80-82.1% for classification models. The proposed QSAR models are freely available online on OCHEM server at https://ochem.eu/article/107364 and can be used for estimation of antibacterial activity of new imidazolium-based ILs. A series of synthesized 1,3-dialkylimidazolium ILs with predicted activity were evaluated in vitro. The high activity of 7 ILs against S. aureus strain and its clinical isolate was measured and thereafter analyzed by the molecular docking to prokaryotic homologue of a eukaryotic tubulin FtsZ. (C) 2018 Elsevier Ltd. All rights reserved.
引用
收藏
页码:127 / 138
页数:12
相关论文
共 71 条
  • [1] [Anonymous], 2009, SIGKDD Explorations, DOI DOI 10.1145/1656274.1656278
  • [2] [Anonymous], Z NATURFORSCH
  • [3] [Anonymous], SIDE EFF DRUGS ANN
  • [4] [Anonymous], 2010, DER PHARM CHEM
  • [5] [Anonymous], 2008, Handbook of molecular descriptors
  • [6] [Anonymous], WE ARE SURROUNDED
  • [7] [Anonymous], SELECTION IDEAL DISI
  • [8] [Anonymous], J HOSP INFECT
  • [9] Why is Tanimoto index an appropriate choice for fingerprint-based similarity calculations?
    Bajusz, David
    Racz, Anita
    Heberger, Kroly
    [J]. JOURNAL OF CHEMINFORMATICS, 2015, 7
  • [10] BAUER AW, 1966, AM J CLIN PATHOL, V45, P493